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Selected Module: B_9_4


Module Info

Module_Name B_9_4
Cell_Type B
Name B_9_4: CD4 TEM
Meta_Module B_7
Gene_Number 29

Genes:

AAK1, ANXA1, CD3D, CD3E, DENND2D, DNAJB1, FLT3LG, FYB1, FYN, GIMAP4, GIMAP7, IL32, IL7R, LAT, LCK, LEPROTL1, MGAT4A, NDFIP1, NOSIP, PIK3R1, RCAN3, RNF125, SEMA4D, SORL1, SPOCK2, SYNE2, TCF7, TOB1, TSPAN14


UMAP Visualizations


UMAP for B_9_4

UMAP for B_9_4


Word Cloud

Enriched TF

Wordcloud for B_9_4
TF p.adjust Genes
STAT4 0.00182775675931345 AAK1/CD3D/LAT/LEPROTL1/NDFIP1
AP4 0.00554051020280923 LAT/LCK/SPOCK2/TCF7
PEA3 0.00554051020280923 CD3E/DENND2D/LCK/SORL1
CETS1P54 0.00554051020280923 CD3E/IL7R/NOSIP/TCF7
AML 0.00554051020280923 IL7R/LCK/PIK3R1/TCF7
RACCACAR 0.00554051020280923 IL7R/LCK/PIK3R1/TCF7
HOXA4 0.00554051020280923 NDFIP1/PIK3R1/SYNE2/TOB1
ELK1 0.00554051020280923 FYN/IL7R/LCK/TCF7


Functional Enrichment Results

enrichment_term
module ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
onek1k B_9_4 CD4 Naive CD4 Naive 6/23 91/6471 5.45559839469308e-07 1.09111967893862e-06 1.1485470304617e-07 FLT3LG/IL7R/LEPROTL1/NOSIP/RCAN3/TCF7 6
MeSH_gene2pubmed B_9_4 D055765 Shc Signaling Adaptor Proteins 6/29 279/26076 5.4920123469708e-07 4.00038131549025e-05 2.55804019190228e-05 CD3E/FYB1/FYN/LAT/LCK/PIK3R1 6
MeSH_gene2pubmed B_9_4 D015693 Gene Products, nef 6/29 280/26076 5.6080111899396e-07 4.00038131549025e-05 2.55804019190228e-05 CD3D/CD3E/DNAJB1/FYN/LCK/PIK3R1 6
GO B_9_4 GO:0002768 immune response-regulating cell surface receptor signaling pathway 7/27 369/18986 6.28533667596964e-07 9.14965438973294e-05 6.16246543268e-05 CD3D/CD3E/FYB1/FYN/LAT/LCK/PIK3R1 7
MeSH_gene2pubmed B_9_4 D050721 Proto-Oncogene Proteins c-cbl 6/29 287/26076 6.47762943811865e-07 4.43588063922365e-05 2.83651983816564e-05 CD3E/FYB1/FYN/LAT/LCK/PIK3R1 6
KEGG B_9_4 hsa05235 PD-L1 expression and PD-1 checkpoint pathway in cancer 5/17 90/8541 6.50511741562e-07 3.24547769365683e-05 2.42877031350964e-05 CD3D/CD3E/LAT/LCK/PIK3R1 5
MeSH_gene2pubmed B_9_4 D016747 Minor Lymphocyte Stimulatory Antigens 3/29 16/26076 6.8582176387432e-07 4.51587253751091e-05 2.88767058473398e-05 FYN/LCK/PIK3R1 3
reactome B_9_4 R-HSA-114604 GPVI-mediated activation cascade 4/23 35/11146 6.9146978257513e-07 3.1807609998456e-05 1.67408473676084e-05 FYN/LAT/LCK/PIK3R1 4
MeSH_gene2pubmed B_9_4 D053616 Janus Kinase 3 5/29 154/26076 7.129152709779e-07 4.5204109033858e-05 2.89057263866283e-05 CD3E/FYN/IL7R/LCK/PIK3R1 5
KEGG B_9_4 hsa05340 Primary immunodeficiency 4/17 38/8541 7.60658834450821e-07 3.24547769365683e-05 2.42877031350964e-05 CD3D/CD3E/IL7R/LCK 4