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Selected Module: B_9_4


Module Info

Module_Name B_9_4
Cell_Type B
Name B_9_4: CD4 TEM
Meta_Module B_7
Gene_Number 29

Genes:

AAK1, ANXA1, CD3D, CD3E, DENND2D, DNAJB1, FLT3LG, FYB1, FYN, GIMAP4, GIMAP7, IL32, IL7R, LAT, LCK, LEPROTL1, MGAT4A, NDFIP1, NOSIP, PIK3R1, RCAN3, RNF125, SEMA4D, SORL1, SPOCK2, SYNE2, TCF7, TOB1, TSPAN14


UMAP Visualizations


UMAP for B_9_4

UMAP for B_9_4


Word Cloud

Enriched TF

Wordcloud for B_9_4
TF p.adjust Genes
STAT4 0.00182775675931345 AAK1/CD3D/LAT/LEPROTL1/NDFIP1
AP4 0.00554051020280923 LAT/LCK/SPOCK2/TCF7
PEA3 0.00554051020280923 CD3E/DENND2D/LCK/SORL1
CETS1P54 0.00554051020280923 CD3E/IL7R/NOSIP/TCF7
AML 0.00554051020280923 IL7R/LCK/PIK3R1/TCF7
RACCACAR 0.00554051020280923 IL7R/LCK/PIK3R1/TCF7
HOXA4 0.00554051020280923 NDFIP1/PIK3R1/SYNE2/TOB1
ELK1 0.00554051020280923 FYN/IL7R/LCK/TCF7


Functional Enrichment Results

enrichment_term
module ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
reactome B_9_4 R-HSA-388841 Costimulation by the CD28 family 5/23 69/11146 2.42194447556301e-07 1.85682409793164e-05 9.77275841016655e-06 CD3D/CD3E/FYN/LCK/PIK3R1 5
MeSH_gene2pubmed B_9_4 D011947 Receptors, Antigen, B-Cell 7/29 412/26076 2.7009722913109e-07 2.7200379780731e-05 1.73932580988442e-05 CD3D/CD3E/FYB1/FYN/LAT/LCK/PIK3R1 7
GO B_9_4 GO:0002429 immune response-activating cell surface receptor signaling pathway 7/27 336/18986 3.34524213933473e-07 6.81760347996417e-05 4.5917849996763e-05 CD3D/CD3E/FYB1/FYN/LAT/LCK/PIK3R1 7
MeSH_gene2pubmed B_9_4 D019009 Proto-Oncogene Proteins c-kit 7/29 426/26076 3.38306017403382e-07 3.21766612108105e-05 2.05753367309659e-05 CD3E/FLT3LG/FYN/IL7R/LAT/LCK/PIK3R1 7
reactome B_9_4 R-HSA-2424491 DAP12 signaling 4/23 30/11146 3.643922974836e-07 2.0952557105307e-05 1.10276616343721e-05 FYN/LAT/LCK/PIK3R1 4
MeSH_gene2pubmed B_9_4 D007108 Immune Tolerance 7/29 434/26076 3.83423613548587e-07 3.45484855997463e-05 2.20919976781457e-05 CD3D/CD3E/FLT3LG/FYN/LAT/LCK/TCF7 7
MeSH_gene2pubmed B_9_4 D016511 Severe Combined Immunodeficiency 5/29 139/26076 4.28951240567666e-07 3.67182261925922e-05 2.34794363258091e-05 CD3D/CD3E/FYN/IL7R/LCK 5
GO B_9_4 GO:0050851 antigen receptor-mediated signaling pathway 6/27 212/18986 4.39495101190427e-07 7.46409180188409e-05 5.02720712238875e-05 CD3D/CD3E/FYB1/FYN/LAT/LCK 6
MeSH_gene2pubmed B_9_4 D054311 nef Gene Products, Human Immunodeficiency Virus 6/29 270/26076 4.53388681272978e-07 3.69619724923495e-05 2.36352996753833e-05 CD3D/CD3E/DNAJB1/FYN/LCK/PIK3R1 6
MeSH_gene2pubmed B_9_4 D015302 Simian Immunodeficiency Virus 6/29 275/26076 5.04752655619724e-07 3.92789339282258e-05 2.51168785571537e-05 CD3D/CD3E/FYB1/FYN/IL7R/LCK 6