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Selected Module: B_9_4


Module Info

Module_Name B_9_4
Cell_Type B
Name B_9_4: CD4 TEM
Meta_Module B_7
Gene_Number 29

Genes:

AAK1, ANXA1, CD3D, CD3E, DENND2D, DNAJB1, FLT3LG, FYB1, FYN, GIMAP4, GIMAP7, IL32, IL7R, LAT, LCK, LEPROTL1, MGAT4A, NDFIP1, NOSIP, PIK3R1, RCAN3, RNF125, SEMA4D, SORL1, SPOCK2, SYNE2, TCF7, TOB1, TSPAN14


UMAP Visualizations


UMAP for B_9_4

UMAP for B_9_4


Word Cloud

Enriched TF

Wordcloud for B_9_4
TF p.adjust Genes
STAT4 0.00182775675931345 AAK1/CD3D/LAT/LEPROTL1/NDFIP1
AP4 0.00554051020280923 LAT/LCK/SPOCK2/TCF7
PEA3 0.00554051020280923 CD3E/DENND2D/LCK/SORL1
CETS1P54 0.00554051020280923 CD3E/IL7R/NOSIP/TCF7
AML 0.00554051020280923 IL7R/LCK/PIK3R1/TCF7
RACCACAR 0.00554051020280923 IL7R/LCK/PIK3R1/TCF7
HOXA4 0.00554051020280923 NDFIP1/PIK3R1/SYNE2/TOB1
ELK1 0.00554051020280923 FYN/IL7R/LCK/TCF7


Functional Enrichment Results

enrichment_term
module ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
KEGG B_9_4 hsa04660 T cell receptor signaling pathway 6/17 122/8541 8.17134991468146e-08 1.04593278907923e-05 7.82729307616856e-06 CD3D/CD3E/FYN/LAT/LCK/PIK3R1 6
GO B_9_4 GO:0030098 lymphocyte differentiation 8/27 426/18986 9.18874734067876e-08 3.12111118005055e-05 2.10212746179739e-05 ANXA1/CD3D/CD3E/IL7R/LCK/NDFIP1/PIK3R1/TCF7 8
WikiPathways B_9_4 WP5072 Modulators of TCR signaling and T cell activation 5/18 61/8836 1.06126651229141e-07 5.37708366227649e-06 3.87269183432656e-06 CD3D/CD3E/LAT/LCK/PIK3R1 5
MeSH_gene2pubmed B_9_4 D018801 CD2 Antigens 6/29 212/26076 1.09328156826704e-07 1.55974837072765e-05 9.97379676313793e-06 CD3D/CD3E/FYN/LAT/LCK/PIK3R1 6
reactome B_9_4 R-HSA-202403 TCR signaling 6/23 120/11146 1.19378575374321e-07 1.37285361680469e-05 7.22554535160365e-06 CD3D/CD3E/FYB1/LAT/LCK/PIK3R1 6
MeSH_gene2pubmed B_9_4 D010835 Phytohemagglutinins 7/29 367/26076 1.23513827618376e-07 1.62658209909739e-05 1.04011644310212e-05 ANXA1/CD3D/CD3E/FYN/IL32/LCK/TCF7 7
MeSH_gene2pubmed B_9_4 D016827 CD8 Antigens 7/29 374/26076 1.40398109116187e-07 1.71686830576365e-05 1.09784987579575e-05 CD3D/CD3E/FLT3LG/FYB1/FYN/LAT/LCK 7
MeSH_gene2pubmed B_9_4 D007152 Immunologic Capping 5/29 113/26076 1.52769302710171e-07 1.74360697493209e-05 1.1149478934637e-05 CD3D/CD3E/FYN/LAT/LCK 5
MeSH_gene2pubmed B_9_4 D016097 Simian Acquired Immunodeficiency Syndrome 5/29 116/26076 1.7416207090045e-07 1.86353415863482e-05 1.19163522195045e-05 CD3D/CD3E/FYN/IL7R/LCK 5
GO B_9_4 GO:0030217 T cell differentiation 7/27 320/18986 2.4054858983744e-07 6.12797532610878e-05 4.1273073835266e-05 ANXA1/CD3D/CD3E/IL7R/LCK/PIK3R1/TCF7 7