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Selected Module: B_9_4
Module Info
| Module_Name | B_9_4 |
| Cell_Type | B |
| Name | B_9_4: CD4 TEM |
| Meta_Module | B_7 |
| Gene_Number | 29 |
Genes:
AAK1, ANXA1, CD3D, CD3E, DENND2D, DNAJB1, FLT3LG, FYB1, FYN, GIMAP4, GIMAP7, IL32, IL7R, LAT, LCK, LEPROTL1, MGAT4A, NDFIP1, NOSIP, PIK3R1, RCAN3, RNF125, SEMA4D, SORL1, SPOCK2, SYNE2, TCF7, TOB1, TSPAN14
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| STAT4 | 0.00182775675931345 | AAK1/CD3D/LAT/LEPROTL1/NDFIP1 |
| AP4 | 0.00554051020280923 | LAT/LCK/SPOCK2/TCF7 |
| PEA3 | 0.00554051020280923 | CD3E/DENND2D/LCK/SORL1 |
| CETS1P54 | 0.00554051020280923 | CD3E/IL7R/NOSIP/TCF7 |
| AML | 0.00554051020280923 | IL7R/LCK/PIK3R1/TCF7 |
| RACCACAR | 0.00554051020280923 | IL7R/LCK/PIK3R1/TCF7 |
| HOXA4 | 0.00554051020280923 | NDFIP1/PIK3R1/SYNE2/TOB1 |
| ELK1 | 0.00554051020280923 | FYN/IL7R/LCK/TCF7 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| WikiPathways | B_9_4 | WP4884 | Pathogenesis of SARS CoV 2 mediated by nsp9 nsp10 complex | 3/18 | 21/8836 | 9.22805616361876e-06 | 0.00022072415454725 | 0.00015897030521408 | CD3E/FYN/LCK | 3 |
| MeSH_gene2pubmed | B_9_4 | D020395 | Receptors, Interleukin-7 | 4/29 | 120/26076 | 9.26732857923278e-06 | 0.00023331862540656 | 0.00014919538269972 | CD3E/FYN/IL7R/PIK3R1 | 4 |
| MeSH_gene2pubmed | B_9_4 | D006825 | Hybridomas | 6/29 | 459/26076 | 9.6990570027965e-06 | 0.00024064906650416 | 0.00015388282658899 | CD3D/CD3E/FYB1/FYN/LAT/LCK | 6 |
| WikiPathways | B_9_4 | WP5130 | Th17 cell differentiation pathway | 4/18 | 70/8836 | 1.01649281699393e-05 | 0.00022072415454725 | 0.00015897030521408 | CD3D/CD3E/LAT/LCK | 4 |
| reactome | B_9_4 | R-HSA-202427 | Phosphorylation of CD3 and TCR zeta chains | 3/23 | 22/11146 | 1.15222395288e-05 | 0.00022084292430199 | 0.00011623311805368 | CD3D/CD3E/LCK | 3 |
| reactome | B_9_4 | R-HSA-389357 | CD28 dependent PI3K/Akt signaling | 3/23 | 22/11146 | 1.15222395288e-05 | 0.00022084292430199 | 0.00011623311805368 | FYN/LCK/PIK3R1 | 3 |
| MeSH_gene2pubmed | B_9_4 | D008221 | Lymphoid Tissue | 6/29 | 475/26076 | 1.17814519607039e-05 | 0.0002881406536675 | 0.00018425127878394 | CD3E/FYN/LAT/LCK/MGAT4A/RNF125 | 6 |
| WikiPathways | B_9_4 | WP4585 | Cancer immunotherapy by PD 1 blockade | 3/18 | 23/8836 | 1.22566017703805e-05 | 0.00023287543363723 | 0.0001677219189631 | CD3D/CD3E/LCK | 3 |
| reactome | B_9_4 | R-HSA-389948 | PD-1 signaling | 3/23 | 23/11146 | 1.32327446544837e-05 | 0.00023411779004086 | 0.00012321988949519 | CD3D/CD3E/LCK | 3 |
| MeSH_gene2pubmed | B_9_4 | D007377 | Interleukin-3 | 6/29 | 485/26076 | 1.32574664031925e-05 | 0.00031967299270796 | 0.0002044146042894 | CD3E/FLT3LG/FYN/LAT/LCK/PIK3R1 | 6 |