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Selected Module: B_9_3
Module Info
| Module_Name | B_9_3 |
| Cell_Type | B |
| Name | B_9_3: mitochondrial protein-containing complex |
| Meta_Module | B_3 |
| Gene_Number | 67 |
Genes:
ADSL, ALDOA, ATP1B3, CCND2, CCT5, CCT7, CDK4, CHCHD7, COA6, EBNA1BP2, EEF1E1, EIF3I, EIF5A, ENY2, FABP5, GADD45GIP1, GGCT, GNL2, GRWD1, HADH, HIGD1A, HSPD1, ILF2, IMP4, LDHA, LSM5, MAGOHB, MICOS10, MRPL12, MRPL16, MRPL17, MRPL18, MRPL4, MRPS25, NDUFAF8, NEDD8, NOL7, OXCT1, PAFAH1B3, PAICS, PDAP1, PDCL3, PGK1, PHB1, PKM, POLR2F, POLR2H, POLR2I, POLR2J, PPM1G, PRMT1, PSMA7, PSMF1, RBIS, RPA3, TAF9, TIMM10, TIMM13, TIMMDC1, TIPRL, TOMM22, TOMM40, TRAP1, UBA1, UQCRFS1, VBP1, VDAC2
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| TGACCTTG | 0.00077214560723105 | ALDOA/HIGD1A/HSPD1/TOMM40/TRAP1/UBA1/VDAC2 |
| EPC1 | 0.00077214560723105 | COA6/EIF5A/MRPL4/PDAP1/PKM/POLR2J/PRMT1/TIMM13 |
| USF | 0.00077214560723105 | EEF1E1/EIF5A/PAICS/POLR2H/PRMT1/TIMM10/UBA1 |
| ATF5 | 0.00162546136866258 | ALDOA/CCT5/HSPD1/ILF2/LSM5/MRPL18/RBIS/RPA3 |
| HIF1 | 0.00190031811966115 | ATP1B3/CCND2/LDHA/PGK1/PRMT1/UBA1 |
| HSF2 | 0.00209156428902918 | CCT5/CCT7/HSPD1/MRPL18/PGK1/PHB1 |
| MYBL1 | 0.00949528706847933 | ALDOA/CCND2/CDK4/IMP4/PKM/RPA3/TOMM40 |
| CASP8AP2 | 0.00949528706847933 | COA6/HSPD1/ILF2/LSM5/MRPL16/PSMF1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_9_3 | GO:0055029 | nuclear DNA-directed RNA polymerase complex | 6/67 | 111/19960 | 1.95506281732853e-06 | 3.74695683366672e-05 | 2.28472977662605e-05 | ENY2/POLR2F/POLR2H/POLR2I/POLR2J/TAF9 | 6 |
| GO | B_9_3 | GO:0140053 | mitochondrial gene expression | 7/66 | 169/18986 | 1.95764640496208e-06 | 0.00059577705591012 | 0.00048219921974855 | GADD45GIP1/MRPL12/MRPL16/MRPL17/MRPL18/MRPL4/MRPS25 | 7 |
| MeSH_gene2pubmed | B_9_3 | D000546 | Amanitins | 5/67 | 81/26076 | 2.11936189600855e-06 | 0.00020262942649229 | 0.00016964594764846 | POLR2F/POLR2H/POLR2I/POLR2J/PPM1G | 5 |
| GO | B_9_3 | GO:0000428 | DNA-directed RNA polymerase complex | 6/67 | 114/19960 | 2.28472977662605e-06 | 3.74695683366672e-05 | 2.28472977662605e-05 | ENY2/POLR2F/POLR2H/POLR2I/POLR2J/TAF9 | 6 |
| GO | B_9_3 | GO:0015934 | large ribosomal subunit | 6/67 | 114/19960 | 2.28472977662605e-06 | 3.74695683366672e-05 | 2.28472977662605e-05 | GADD45GIP1/MRPL12/MRPL16/MRPL17/MRPL18/MRPL4 | 6 |
| MeSH_gene2pubmed | B_9_3 | D044842 | Cullin Proteins | 8/67 | 339/26076 | 2.51489210820536e-06 | 0.0002158141541208 | 0.0001806845003984 | CCND2/CDK4/GRWD1/NEDD8/PSMA7/PSMF1/UBA1/VBP1 | 8 |
| MeSH_gene2pubmed | B_9_3 | D004257 | DNA Polymerase II | 6/67 | 151/26076 | 2.54544060043876e-06 | 0.0002158141541208 | 0.0001806845003984 | CDK4/POLR2F/POLR2H/POLR2I/POLR2J/TAF9 | 6 |
| MeSH_gene2pubmed | B_9_3 | D051357 | Cyclin-Dependent Kinase 2 | 9/67 | 458/26076 | 2.55169077177845e-06 | 0.0002158141541208 | 0.0001806845003984 | CCND2/CCT7/CDK4/EBNA1BP2/NEDD8/POLR2F/POLR2H/POLR2I/POLR2J | 9 |
| GO | B_9_3 | GO:0030880 | RNA polymerase complex | 6/67 | 117/19960 | 2.65840246207808e-06 | 3.96343639800732e-05 | 2.41672951098007e-05 | ENY2/POLR2F/POLR2H/POLR2I/POLR2J/TAF9 | 6 |
| reactome | B_9_3 | R-HSA-8851708 | Signaling by FGFR2 IIIa TM | 4/60 | 19/11146 | 2.76833593177327e-06 | 0.00017056138071984 | 0.00011177985224301 | POLR2F/POLR2H/POLR2I/POLR2J | 4 |