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Selected Module: B_9_3
Module Info
| Module_Name | B_9_3 |
| Cell_Type | B |
| Name | B_9_3: mitochondrial protein-containing complex |
| Meta_Module | B_3 |
| Gene_Number | 67 |
Genes:
ADSL, ALDOA, ATP1B3, CCND2, CCT5, CCT7, CDK4, CHCHD7, COA6, EBNA1BP2, EEF1E1, EIF3I, EIF5A, ENY2, FABP5, GADD45GIP1, GGCT, GNL2, GRWD1, HADH, HIGD1A, HSPD1, ILF2, IMP4, LDHA, LSM5, MAGOHB, MICOS10, MRPL12, MRPL16, MRPL17, MRPL18, MRPL4, MRPS25, NDUFAF8, NEDD8, NOL7, OXCT1, PAFAH1B3, PAICS, PDAP1, PDCL3, PGK1, PHB1, PKM, POLR2F, POLR2H, POLR2I, POLR2J, PPM1G, PRMT1, PSMA7, PSMF1, RBIS, RPA3, TAF9, TIMM10, TIMM13, TIMMDC1, TIPRL, TOMM22, TOMM40, TRAP1, UBA1, UQCRFS1, VBP1, VDAC2
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| TGACCTTG | 0.00077214560723105 | ALDOA/HIGD1A/HSPD1/TOMM40/TRAP1/UBA1/VDAC2 |
| EPC1 | 0.00077214560723105 | COA6/EIF5A/MRPL4/PDAP1/PKM/POLR2J/PRMT1/TIMM13 |
| USF | 0.00077214560723105 | EEF1E1/EIF5A/PAICS/POLR2H/PRMT1/TIMM10/UBA1 |
| ATF5 | 0.00162546136866258 | ALDOA/CCT5/HSPD1/ILF2/LSM5/MRPL18/RBIS/RPA3 |
| HIF1 | 0.00190031811966115 | ATP1B3/CCND2/LDHA/PGK1/PRMT1/UBA1 |
| HSF2 | 0.00209156428902918 | CCT5/CCT7/HSPD1/MRPL18/PGK1/PHB1 |
| MYBL1 | 0.00949528706847933 | ALDOA/CCND2/CDK4/IMP4/PKM/RPA3/TOMM40 |
| CASP8AP2 | 0.00949528706847933 | COA6/HSPD1/ILF2/LSM5/MRPL16/PSMF1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_9_3 | GO:0005665 | RNA polymerase II, core complex | 4/67 | 16/19960 | 2.04690573068305e-07 | 5.59487566386699e-06 | 3.41150955113841e-06 | POLR2F/POLR2H/POLR2I/POLR2J | 4 |
| MeSH_gene2pubmed | B_9_3 | D018741 | Replication Origin | 7/67 | 165/26076 | 2.25962734100087e-07 | 3.82224655604685e-05 | 3.20007143272107e-05 | CDK4/EBNA1BP2/POLR2F/POLR2H/POLR2I/POLR2J/RPA3 | 7 |
| WikiPathways | B_9_3 | WP4628 | Aerobic glycolysis augmented | 4/41 | 13/8836 | 2.76790379485325e-07 | 1.84065602357741e-05 | 1.45679147097539e-05 | ALDOA/LDHA/PGK1/PKM | 4 |
| hallmark | B_9_3 | HALLMARK_MYC_TARGETS_V1 | HALLMARK_MYC_TARGETS_V1 | 11/36 | 200/4384 | 2.98510302603913e-07 | 6.86573695989e-06 | 5.34176330975423e-06 | CCT5/CCT7/CDK4/HSPD1/ILF2/LDHA/PGK1/PHB1/PPM1G/PSMA7/VBP1 | 11 |
| MeSH_gene2pubmed | B_9_3 | D012320 | RNA Polymerase III | 7/67 | 176/26076 | 3.50066977538882e-07 | 5.49855202577144e-05 | 4.60351235876319e-05 | CCND2/LDHA/PGK1/POLR2F/POLR2H/POLR2I/POLR2J | 7 |
| GO | B_9_3 | GO:0032543 | mitochondrial translation | 7/66 | 131/18986 | 3.51769776359626e-07 | 0.00016058290290816 | 0.0001299696752655 | GADD45GIP1/MRPL12/MRPL16/MRPL17/MRPL18/MRPL4/MRPS25 | 7 |
| reactome | B_9_3 | R-HSA-5368286 | Mitochondrial translation initiation | 7/60 | 87/11146 | 3.81839691325129e-07 | 3.97113278978134e-05 | 2.60253894876864e-05 | GADD45GIP1/MRPL12/MRPL16/MRPL17/MRPL18/MRPL4/MRPS25 | 7 |
| reactome | B_9_3 | R-HSA-5389840 | Mitochondrial translation elongation | 7/60 | 87/11146 | 3.81839691325129e-07 | 3.97113278978134e-05 | 2.60253894876864e-05 | GADD45GIP1/MRPL12/MRPL16/MRPL17/MRPL18/MRPL4/MRPS25 | 7 |
| reactome | B_9_3 | R-HSA-5419276 | Mitochondrial translation termination | 7/60 | 87/11146 | 3.81839691325129e-07 | 3.97113278978134e-05 | 2.60253894876864e-05 | GADD45GIP1/MRPL12/MRPL16/MRPL17/MRPL18/MRPL4/MRPS25 | 7 |
| GO | B_9_3 | GO:0016591 | RNA polymerase II, holoenzyme | 6/67 | 87/19960 | 4.6433210410803e-07 | 1.08786378676738e-05 | 6.63331577297185e-06 | ENY2/POLR2F/POLR2H/POLR2I/POLR2J/TAF9 | 6 |