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Selected Module: B_9_3
Module Info
| Module_Name | B_9_3 |
| Cell_Type | B |
| Name | B_9_3: mitochondrial protein-containing complex |
| Meta_Module | B_3 |
| Gene_Number | 67 |
Genes:
ADSL, ALDOA, ATP1B3, CCND2, CCT5, CCT7, CDK4, CHCHD7, COA6, EBNA1BP2, EEF1E1, EIF3I, EIF5A, ENY2, FABP5, GADD45GIP1, GGCT, GNL2, GRWD1, HADH, HIGD1A, HSPD1, ILF2, IMP4, LDHA, LSM5, MAGOHB, MICOS10, MRPL12, MRPL16, MRPL17, MRPL18, MRPL4, MRPS25, NDUFAF8, NEDD8, NOL7, OXCT1, PAFAH1B3, PAICS, PDAP1, PDCL3, PGK1, PHB1, PKM, POLR2F, POLR2H, POLR2I, POLR2J, PPM1G, PRMT1, PSMA7, PSMF1, RBIS, RPA3, TAF9, TIMM10, TIMM13, TIMMDC1, TIPRL, TOMM22, TOMM40, TRAP1, UBA1, UQCRFS1, VBP1, VDAC2
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| TGACCTTG | 0.00077214560723105 | ALDOA/HIGD1A/HSPD1/TOMM40/TRAP1/UBA1/VDAC2 |
| EPC1 | 0.00077214560723105 | COA6/EIF5A/MRPL4/PDAP1/PKM/POLR2J/PRMT1/TIMM13 |
| USF | 0.00077214560723105 | EEF1E1/EIF5A/PAICS/POLR2H/PRMT1/TIMM10/UBA1 |
| ATF5 | 0.00162546136866258 | ALDOA/CCT5/HSPD1/ILF2/LSM5/MRPL18/RBIS/RPA3 |
| HIF1 | 0.00190031811966115 | ATP1B3/CCND2/LDHA/PGK1/PRMT1/UBA1 |
| HSF2 | 0.00209156428902918 | CCT5/CCT7/HSPD1/MRPL18/PGK1/PHB1 |
| MYBL1 | 0.00949528706847933 | ALDOA/CCND2/CDK4/IMP4/PKM/RPA3/TOMM40 |
| CASP8AP2 | 0.00949528706847933 | COA6/HSPD1/ILF2/LSM5/MRPL16/PSMF1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_9_3 | GO:0005840 | ribosome | 7/67 | 245/19960 | 1.79035069125366e-05 | 0.0001957450089104 | 0.00011935671275024 | GADD45GIP1/MRPL12/MRPL16/MRPL17/MRPL18/MRPL4/MRPS25 | 7 |
| KEGG | B_9_3 | hsa03020 | RNA polymerase | 4/41 | 34/8541 | 1.91000674136768e-05 | 0.00115555407852745 | 0.00104547737422231 | POLR2F/POLR2H/POLR2I/POLR2J | 4 |
| GO | B_9_3 | GO:0031970 | organelle envelope lumen | 5/67 | 98/19960 | 1.95368669349183e-05 | 0.00020025288608291 | 0.00012210541834324 | CHCHD7/COA6/TIMM10/TIMM13/TRAP1 | 5 |
| MeSH_gene2pubmed | B_9_3 | D034441 | Heterogeneous-Nuclear Ribonucleoproteins | 8/67 | 450/26076 | 1.97804960990946e-05 | 0.00092547470046614 | 0.00077482839142926 | FABP5/ILF2/POLR2F/POLR2H/POLR2I/POLR2J/PRMT1/TAF9 | 8 |
| reactome | B_9_3 | R-HSA-6782210 | Gap-filling DNA repair synthesis and ligation in TC-NER | 5/60 | 63/11146 | 2.11087393212801e-05 | 0.00038308646456812 | 0.00025106122045329 | POLR2F/POLR2H/POLR2I/POLR2J/RPA3 | 5 |
| reactome | B_9_3 | R-HSA-167238 | Pausing and recovery of Tat-mediated HIV elongation | 4/60 | 31/11146 | 2.1414456356337e-05 | 0.00038308646456812 | 0.00025106122045329 | POLR2F/POLR2H/POLR2I/POLR2J | 4 |
| reactome | B_9_3 | R-HSA-167243 | Tat-mediated HIV elongation arrest and recovery | 4/60 | 31/11146 | 2.1414456356337e-05 | 0.00038308646456812 | 0.00025106122045329 | POLR2F/POLR2H/POLR2I/POLR2J | 4 |
| MeSH_gene2pubmed | B_9_3 | D006192 | Haemophilus Infections | 5/67 | 131/26076 | 2.22981940871688e-05 | 0.00101055720533792 | 0.00084606139256409 | ALDOA/HSPD1/PGK1/PHB1/VDAC2 | 5 |
| MeSH_gene2pubmed | B_9_3 | D016334 | Genes, vpr | 4/67 | 64/26076 | 2.2518100528221e-05 | 0.00101055720533792 | 0.00084606139256409 | POLR2F/POLR2H/POLR2I/POLR2J | 4 |
| reactome | B_9_3 | R-HSA-6782135 | Dual incision in TC-NER | 5/60 | 64/11146 | 2.28036622551423e-05 | 0.00038308646456812 | 0.00025106122045329 | POLR2F/POLR2H/POLR2I/POLR2J/RPA3 | 5 |