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Selected Module: B_9_2
Module Info
| Module_Name | B_9_2 |
| Cell_Type | B |
| Name | B_9_2: ATP biosynthetic process |
| Meta_Module | B_3 |
| Gene_Number | 93 |
Genes:
ANKRD39, ANTKMT, ANXA2, ANXA5, APOBEC3C, ARF3, ATOX1, ATP5MG, ATP6V0B, BID, CD320, CD99, CDK2AP2, CINP, COX5A, CYCS, DAZAP1, DDRGK1, DESI1, DPM2, DYNLL1, EI24, EIF3A, EIF3J, EIF5B, EPRS1, ERP29, EXOSC4, FAM174C, FLOT1, GARS1, GCDH, GEMIN7, GFUS, GNG5, GSPT1, GYG1, H2AJ, HINT2, HMGN3, LRRC59, LSM3, MPG, MRPL24, MRPL40, MRPL52, MRPS28, MTX1, MYL6, NAA10, NDUFA1, NDUFA3, NDUFB11, NDUFB4, NDUFS2, NTAN1, NUDT2, PARP1, PEBP1, PSMC2, PSMD12, RALY, RNASEH1, RNPEP, ROMO1, RPL22L1, RPL36AL, RPS27L, RPS6KB2, RTCA, SEC11A, SERF2, SND1, SRM, TAP1, TARS1, TMED3, TMX2, TOR3A, TPM4, TSEN15, TXNL1, UCHL3, UFC1, UQCC5, VCP, VIM, YWHAG, ZDHHC12, ZNF593, ZNF706, ZNG1A, ZNRD2
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| IRX2 | 0.00722520263260075 | ANXA2/ATP6V0B/NUDT2/PSMC2/SERF2/TARS1/UCHL3 |
| CETS1P54 | 0.0343080825056725 | ARF3/GSPT1/MRPL52/PSMC2/PSMD12/UFC1 |
| AML1 | 0.0343080825056725 | ARF3/ATP6V0B/DYNLL1/EIF3J/MTX1/VIM |
| AML1 | 0.0343080825056725 | ARF3/ATP6V0B/DYNLL1/EIF3J/MTX1/VIM |
| TASOR | 0.0407822546538425 | ANTKMT/CDK2AP2/CYCS/EPRS1/MPG/TXNL1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| MeSH_gene2pubmed | B_9_2 | D013879 | Thioredoxins | 8/93 | 313/26076 | 1.65734612692636e-05 | 0.0130474573842277 | 0.0113484595322694 | ANXA2/BID/DYNLL1/ERP29/FLOT1/TMX2/TXNL1/VIM | 8 |
| GO | B_9_2 | GO:0097250 | mitochondrial respirasome assembly | 6/90 | 114/18986 | 1.6958253881861e-05 | 0.0005976638665391 | 0.0005610938624354 | NDUFA1/NDUFA3/NDUFB11/NDUFB4/NDUFS2/UQCC5 | 6 |
| GO | B_9_2 | GO:0005840 | ribosome | 8/92 | 245/19960 | 1.76065721468047e-05 | 0.00105199268577158 | 0.0008571620650418 | GSPT1/MRPL24/MRPL40/MRPL52/MRPS28/RPL22L1/RPL36AL/RPS27L | 8 |
| KEGG | B_9_2 | hsa05014 | Amyotrophic lateral sclerosis | 11/55 | 371/8541 | 1.91233854853093e-05 | 0.00087967573232422 | 0.00078506529887059 | BID/COX5A/CYCS/NDUFA1/NDUFA3/NDUFB11/NDUFB4/NDUFS2/PSMC2/PSMD12/VCP | 11 |
| GO | B_9_2 | GO:0015453 | oxidoreduction-driven active transmembrane transporter activity | 5/91 | 68/18737 | 1.98053884451693e-05 | 0.0017428741831749 | 0.00148019218906002 | COX5A/NDUFA1/NDUFA3/NDUFB4/NDUFS2 | 5 |
| MeSH_gene2pubmed | B_9_2 | D048748 | MAP Kinase Kinase Kinase 3 | 8/93 | 325/26076 | 2.17010617894061e-05 | 0.013667328714968 | 0.0118876132160073 | EPRS1/LRRC59/MYL6/PSMC2/PSMD12/RPS27L/VIM/YWHAG | 8 |
| reactome | B_9_2 | R-HSA-1428517 | Aerobic respiration and respiratory electron transport | 9/67 | 260/11146 | 2.33471752261481e-05 | 0.00396123739670313 | 0.00328498851427557 | ATP5MG/COX5A/CYCS/NDUFA1/NDUFA3/NDUFB11/NDUFB4/NDUFS2/UQCC5 | 9 |
| GO | B_9_2 | GO:0009117 | nucleotide metabolic process | 11/90 | 500/18986 | 2.41207698673164e-05 | 0.00082772326071001 | 0.00077707632564235 | ANTKMT/ATP5MG/GARS1/NDUFA1/NDUFA3/NDUFB11/NDUFB4/NDUFS2/NUDT2/PARP1/VCP | 11 |
| WikiPathways | B_9_2 | WP111 | Electron transport chain OXPHOS system in mitochondria | 6/50 | 105/8836 | 2.53651692180631e-05 | 0.00123443823527907 | 0.00111250742184487 | ATP5MG/COX5A/NDUFA1/NDUFA3/NDUFB4/NDUFS2 | 6 |
| GO | B_9_2 | GO:0015078 | proton transmembrane transporter activity | 7/91 | 185/18737 | 3.28554375302802e-05 | 0.00216845887699849 | 0.00184163373524991 | ATP5MG/ATP6V0B/COX5A/NDUFA1/NDUFA3/NDUFB4/NDUFS2 | 7 |