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Selected Module: B_9_2
Module Info
| Module_Name | B_9_2 |
| Cell_Type | B |
| Name | B_9_2: ATP biosynthetic process |
| Meta_Module | B_3 |
| Gene_Number | 93 |
Genes:
ANKRD39, ANTKMT, ANXA2, ANXA5, APOBEC3C, ARF3, ATOX1, ATP5MG, ATP6V0B, BID, CD320, CD99, CDK2AP2, CINP, COX5A, CYCS, DAZAP1, DDRGK1, DESI1, DPM2, DYNLL1, EI24, EIF3A, EIF3J, EIF5B, EPRS1, ERP29, EXOSC4, FAM174C, FLOT1, GARS1, GCDH, GEMIN7, GFUS, GNG5, GSPT1, GYG1, H2AJ, HINT2, HMGN3, LRRC59, LSM3, MPG, MRPL24, MRPL40, MRPL52, MRPS28, MTX1, MYL6, NAA10, NDUFA1, NDUFA3, NDUFB11, NDUFB4, NDUFS2, NTAN1, NUDT2, PARP1, PEBP1, PSMC2, PSMD12, RALY, RNASEH1, RNPEP, ROMO1, RPL22L1, RPL36AL, RPS27L, RPS6KB2, RTCA, SEC11A, SERF2, SND1, SRM, TAP1, TARS1, TMED3, TMX2, TOR3A, TPM4, TSEN15, TXNL1, UCHL3, UFC1, UQCC5, VCP, VIM, YWHAG, ZDHHC12, ZNF593, ZNF706, ZNG1A, ZNRD2
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| IRX2 | 0.00722520263260075 | ANXA2/ATP6V0B/NUDT2/PSMC2/SERF2/TARS1/UCHL3 |
| CETS1P54 | 0.0343080825056725 | ARF3/GSPT1/MRPL52/PSMC2/PSMD12/UFC1 |
| AML1 | 0.0343080825056725 | ARF3/ATP6V0B/DYNLL1/EIF3J/MTX1/VIM |
| AML1 | 0.0343080825056725 | ARF3/ATP6V0B/DYNLL1/EIF3J/MTX1/VIM |
| TASOR | 0.0407822546538425 | ANTKMT/CDK2AP2/CYCS/EPRS1/MPG/TXNL1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_9_2 | GO:0044391 | ribosomal subunit | 6/92 | 186/19960 | 0.00022174320453091 | 0.00588851398698769 | 0.00479795237873915 | MRPL24/MRPL40/MRPL52/MRPS28/RPL36AL/RPS27L | 6 |
| MeSH_gene2pubmed | B_9_2 | D007935 | Leucine-tRNA Ligase | 3/93 | 34/26076 | 0.00024255284775427 | 0.0401999430304323 | 0.0349652360031371 | EPRS1/GARS1/TARS1 | 3 |
| reactome | B_9_2 | R-HSA-9711123 | Cellular response to chemical stress | 7/67 | 211/11146 | 0.0002618957618832 | 0.0133304942798552 | 0.0110547579489648 | ATOX1/COX5A/CYCS/NUDT2/PSMC2/PSMD12/VCP | 7 |
| MeSH_gene2pubmed | B_9_2 | D054320 | vif Gene Products, Human Immunodeficiency Virus | 4/93 | 88/26076 | 0.00028118196891955 | 0.0442721010063842 | 0.0385071306909835 | APOBEC3C/PSMC2/PSMD12/VIM | 4 |
| MeSH_gene2pubmed | B_9_2 | D016346 | Gene Products, vif | 4/93 | 90/26076 | 0.00030643936737253 | 0.0459513127550524 | 0.0399676808974098 | APOBEC3C/PSMC2/PSMD12/VIM | 4 |
| KEGG | B_9_2 | hsa05415 | Diabetic cardiomyopathy | 7/55 | 205/8541 | 0.00031630437774829 | 0.00436500041292646 | 0.00389553812595268 | COX5A/NDUFA1/NDUFA3/NDUFB11/NDUFB4/NDUFS2/PARP1 | 7 |
| reactome | B_9_2 | R-HSA-109606 | Intrinsic Pathway for Apoptosis | 4/67 | 55/11146 | 0.00032298030906173 | 0.0149451797556749 | 0.0123937898501202 | BID/CYCS/DYNLL1/YWHAG | 4 |
| GO | B_9_2 | GO:1905368 | peptidase complex | 5/92 | 129/19960 | 0.00032721873280723 | 0.00782052771409285 | 0.00637215427045663 | PSMC2/PSMD12/SEC11A/TXNL1/VCP | 5 |
| MeSH_gene2pubmed | B_9_2 | D015750 | Genes, gag | 3/93 | 38/26076 | 0.0003384303722432 | 0.0463874245991889 | 0.0403470036626797 | ANXA2/APOBEC3C/RNASEH1 | 3 |
| WikiPathways | B_9_2 | WP623 | Oxidative phosphorylation | 4/50 | 60/8836 | 0.00035039712041459 | 0.0127894948951327 | 0.0115262210662696 | ATP5MG/NDUFA3/NDUFB4/NDUFS2 | 4 |