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Selected Module: B_9_1
Module Info
| Module_Name | B_9_1 |
| Cell_Type | B |
| Name | B_9_1: alternative mRNA splicing, via spliceosome |
| Meta_Module | B_6 |
| Gene_Number | 61 |
Genes:
APC, ARID4A, ARID4B, ASH1L, CDK13, CELF1, CLEC2D, CNTRL, CREBRF, CSNK1G3, DDX17, DDX5, DGKD, DMTF1, EPC1, EZH1, FRYL, GPATCH8, HMBOX1, INO80D, KDM7A, LNPEP, MARF1, MYCBP2, NEMF, NIPBL, PCF11, PCMTD1, PHC3, PHF3, PNN, PUM1, RABEP1, RBM33, RBM5, RBM6, RC3H2, RERE, RPS6KA5, SENP6, SENP7, SHPRH, SP100, STIM2, TMX4, TRIM38, TRIM56, TTC17, UHRF2, USP34, USP6NL, WAC, YTHDC1, ZBED5, ZMYM2, ZNF431, ZNF451, ZNF506, ZNF644, ZNF800, ZNF91
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| NFMUE1 | 9.59622954380021e-07 | ASH1L/CELF1/EPC1/PCF11/PHC3/RBM5/ZBED5/ZMYM2/ZNF644 |
| KCCGNSWTTT | 9.59622954380021e-07 | CELF1/DDX17/DDX5/DMTF1/LNPEP/NIPBL/PCF11 |
| E2F | 8.10598095340964e-06 | ARID4A/DDX17/EPC1/NIPBL/RPS6KA5/YTHDC1/ZMYM2/ZNF644 |
| GCCATNTTG | 5.39602946612284e-05 | ARID4A/CELF1/DDX17/EPC1/HMBOX1/PCF11/PUM1/RBM5/TTC17 |
| E2F | 8.1908384515829e-05 | ARID4A/DDX17/NIPBL/RPS6KA5/YTHDC1/ZMYM2/ZNF644 |
| YY1 | 0.00010298200407859 | ARID4A/ASH1L/EPC1/INO80D/PCF11/PHC3/PUM1 |
| SMTTTTGT | 0.00020406895574873 | ARID4A/DDX17/DDX5/EPC1/NIPBL/PCF11/RBM5/ZMYM2 |
| ETF | 0.00038828502377749 | ASH1L/EPC1/RERE/WAC/ZNF644 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_9_1 | GO:0043484 | regulation of RNA splicing | 5/59 | 190/18986 | 0.00030764930396082 | 0.0195577057517956 | 0.0174643025932651 | CELF1/DDX17/DDX5/RBM5/YTHDC1 | 5 |
| GO | B_9_1 | GO:0016605 | PML body | 4/60 | 109/19960 | 0.00032428419413362 | 0.0363198297429656 | 0.0307216604968694 | HMBOX1/SP100/ZMYM2/ZNF451 | 4 |
| GO | B_9_1 | GO:1990247 | N6-methyladenosine-containing RNA reader activity | 2/60 | 12/18737 | 0.00065193839906027 | 0.031786660560381 | 0.0233998808390834 | RBM33/YTHDC1 | 2 |
| GO | B_9_1 | GO:0019787 | ubiquitin-like protein transferase activity | 7/60 | 482/18737 | 0.00084882588189496 | 0.031786660560381 | 0.0233998808390834 | MYCBP2/RC3H2/SHPRH/TRIM38/TRIM56/UHRF2/ZNF451 | 7 |
| hallmark | B_9_1 | HALLMARK_UV_RESPONSE_DN | HALLMARK_UV_RESPONSE_DN | 4/14 | 144/4384 | 0.00086442827921515 | 0.00605099795450609 | 0.00272977351331102 | CDK13/NIPBL/PHF3/YTHDC1 | 4 |
| GO | B_9_1 | GO:0061630 | ubiquitin protein ligase activity | 6/60 | 355/18737 | 0.00093793761311102 | 0.031786660560381 | 0.0233998808390834 | MYCBP2/RC3H2/SHPRH/TRIM38/TRIM56/UHRF2 | 6 |
| GO | B_9_1 | GO:0016755 | aminoacyltransferase activity | 7/60 | 499/18737 | 0.0010387797568752 | 0.031786660560381 | 0.0233998808390834 | MYCBP2/RC3H2/SHPRH/TRIM38/TRIM56/UHRF2/ZNF451 | 7 |
| reactome | B_9_1 | R-HSA-3247509 | Chromatin modifying enzymes | 5/34 | 270/11146 | 0.00125776924797637 | 0.0337297630475577 | 0.0272753747892415 | ARID4A/ARID4B/ASH1L/EPC1/KDM7A | 5 |
| reactome | B_9_1 | R-HSA-4839726 | Chromatin organization | 5/34 | 270/11146 | 0.00125776924797637 | 0.0337297630475577 | 0.0272753747892415 | ARID4A/ARID4B/ASH1L/EPC1/KDM7A | 5 |
| reactome | B_9_1 | R-HSA-1839117 | Signaling by cytosolic FGFR1 fusion mutants | 2/34 | 18/11146 | 0.00134025548533342 | 0.0337297630475577 | 0.0272753747892415 | CNTRL/ZMYM2 | 2 |