Module Explorer
Instructions
- Enter a module name.
- Click Submit to search for the detailed information of the module.
- Results will appear below if available.
Selected Module: B_9_1
Module Info
| Module_Name | B_9_1 |
| Cell_Type | B |
| Name | B_9_1: alternative mRNA splicing, via spliceosome |
| Meta_Module | B_6 |
| Gene_Number | 61 |
Genes:
APC, ARID4A, ARID4B, ASH1L, CDK13, CELF1, CLEC2D, CNTRL, CREBRF, CSNK1G3, DDX17, DDX5, DGKD, DMTF1, EPC1, EZH1, FRYL, GPATCH8, HMBOX1, INO80D, KDM7A, LNPEP, MARF1, MYCBP2, NEMF, NIPBL, PCF11, PCMTD1, PHC3, PHF3, PNN, PUM1, RABEP1, RBM33, RBM5, RBM6, RC3H2, RERE, RPS6KA5, SENP6, SENP7, SHPRH, SP100, STIM2, TMX4, TRIM38, TRIM56, TTC17, UHRF2, USP34, USP6NL, WAC, YTHDC1, ZBED5, ZMYM2, ZNF431, ZNF451, ZNF506, ZNF644, ZNF800, ZNF91
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| NFMUE1 | 9.59622954380021e-07 | ASH1L/CELF1/EPC1/PCF11/PHC3/RBM5/ZBED5/ZMYM2/ZNF644 |
| KCCGNSWTTT | 9.59622954380021e-07 | CELF1/DDX17/DDX5/DMTF1/LNPEP/NIPBL/PCF11 |
| E2F | 8.10598095340964e-06 | ARID4A/DDX17/EPC1/NIPBL/RPS6KA5/YTHDC1/ZMYM2/ZNF644 |
| GCCATNTTG | 5.39602946612284e-05 | ARID4A/CELF1/DDX17/EPC1/HMBOX1/PCF11/PUM1/RBM5/TTC17 |
| E2F | 8.1908384515829e-05 | ARID4A/DDX17/NIPBL/RPS6KA5/YTHDC1/ZMYM2/ZNF644 |
| YY1 | 0.00010298200407859 | ARID4A/ASH1L/EPC1/INO80D/PCF11/PHC3/PUM1 |
| SMTTTTGT | 0.00020406895574873 | ARID4A/DDX17/DDX5/EPC1/NIPBL/PCF11/RBM5/ZMYM2 |
| ETF | 0.00038828502377749 | ASH1L/EPC1/RERE/WAC/ZNF644 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_9_1 | GO:0050684 | regulation of mRNA processing | 5/59 | 136/18986 | 6.42932285791409e-05 | 0.0063578859372706 | 0.00567735527219315 | CELF1/DDX17/DDX5/RBM5/YTHDC1 | 5 |
| MeSH_gene2pubmed | B_9_1 | D051736 | Proto-Oncogene Proteins c-mdm2 | 7/61 | 440/26076 | 7.38506873253704e-05 | 0.0455729353054342 | 0.0425129825213722 | APC/ARID4A/CELF1/DDX17/DMTF1/PNN/SP100 | 7 |
| GO | B_9_1 | GO:0018205 | peptidyl-lysine modification | 5/59 | 143/18986 | 8.15750919828526e-05 | 0.00726018318647388 | 0.00648307309968987 | SENP6/SENP7/TRIM38/UHRF2/ZNF451 | 5 |
| MeSH_gene2pubmed | B_9_1 | D050701 | E2F6 Transcription Factor | 3/61 | 36/26076 | 8.23111414306458e-05 | 0.0455729353054342 | 0.0425129825213722 | ARID4A/EPC1/PHC3 | 3 |
| GO | B_9_1 | GO:0008380 | RNA splicing | 8/59 | 484/18986 | 0.00011922922335681 | 0.00964672807159709 | 0.00861416876884188 | CDK13/CELF1/DDX17/DDX5/PNN/RBM5/RBM6/YTHDC1 | 8 |
| GO | B_9_1 | GO:0000209 | protein polyubiquitination | 6/59 | 263/18986 | 0.00016257659034399 | 0.012057763783846 | 0.0107671338341853 | LNPEP/MYCBP2/RC3H2/SHPRH/TRIM38/TRIM56 | 6 |
| GO | B_9_1 | GO:0061659 | ubiquitin-like protein ligase activity | 7/60 | 374/18737 | 0.00018555942150804 | 0.0283905914907306 | 0.0208998506330112 | MYCBP2/RC3H2/SHPRH/TRIM38/TRIM56/UHRF2/ZNF451 | 7 |
| reactome | B_9_1 | R-HSA-3108232 | SUMO E3 ligases SUMOylate target proteins | 5/34 | 183/11146 | 0.0002135569535208 | 0.0124887514554382 | 0.0100989555164226 | DDX17/DDX5/PHC3/SP100/UHRF2 | 5 |
| reactome | B_9_1 | R-HSA-2990846 | SUMOylation | 5/34 | 189/11146 | 0.00024812088984314 | 0.0124887514554382 | 0.0100989555164226 | DDX17/DDX5/PHC3/SP100/UHRF2 | 5 |
| GO | B_9_1 | GO:0040029 | epigenetic regulation of gene expression | 6/59 | 295/18986 | 0.00030182162829695 | 0.0195577057517956 | 0.0174643025932651 | ARID4A/ARID4B/EPC1/EZH1/UHRF2/YTHDC1 | 6 |