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Selected Module: B_9_1
Module Info
| Module_Name | B_9_1 |
| Cell_Type | B |
| Name | B_9_1: alternative mRNA splicing, via spliceosome |
| Meta_Module | B_6 |
| Gene_Number | 61 |
Genes:
APC, ARID4A, ARID4B, ASH1L, CDK13, CELF1, CLEC2D, CNTRL, CREBRF, CSNK1G3, DDX17, DDX5, DGKD, DMTF1, EPC1, EZH1, FRYL, GPATCH8, HMBOX1, INO80D, KDM7A, LNPEP, MARF1, MYCBP2, NEMF, NIPBL, PCF11, PCMTD1, PHC3, PHF3, PNN, PUM1, RABEP1, RBM33, RBM5, RBM6, RC3H2, RERE, RPS6KA5, SENP6, SENP7, SHPRH, SP100, STIM2, TMX4, TRIM38, TRIM56, TTC17, UHRF2, USP34, USP6NL, WAC, YTHDC1, ZBED5, ZMYM2, ZNF431, ZNF451, ZNF506, ZNF644, ZNF800, ZNF91
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| NFMUE1 | 9.59622954380021e-07 | ASH1L/CELF1/EPC1/PCF11/PHC3/RBM5/ZBED5/ZMYM2/ZNF644 |
| KCCGNSWTTT | 9.59622954380021e-07 | CELF1/DDX17/DDX5/DMTF1/LNPEP/NIPBL/PCF11 |
| E2F | 8.10598095340964e-06 | ARID4A/DDX17/EPC1/NIPBL/RPS6KA5/YTHDC1/ZMYM2/ZNF644 |
| GCCATNTTG | 5.39602946612284e-05 | ARID4A/CELF1/DDX17/EPC1/HMBOX1/PCF11/PUM1/RBM5/TTC17 |
| E2F | 8.1908384515829e-05 | ARID4A/DDX17/NIPBL/RPS6KA5/YTHDC1/ZMYM2/ZNF644 |
| YY1 | 0.00010298200407859 | ARID4A/ASH1L/EPC1/INO80D/PCF11/PHC3/PUM1 |
| SMTTTTGT | 0.00020406895574873 | ARID4A/DDX17/DDX5/EPC1/NIPBL/PCF11/RBM5/ZMYM2 |
| ETF | 0.00038828502377749 | ASH1L/EPC1/RERE/WAC/ZNF644 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_9_1 | GO:0000380 | alternative mRNA splicing, via spliceosome | 6/59 | 75/18986 | 1.1830818536934e-07 | 0.00010529428497871 | 9.40238736356333e-05 | CDK13/CELF1/DDX17/DDX5/RBM5/YTHDC1 | 6 |
| GO | B_9_1 | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | 5/59 | 57/18986 | 9.01797806051477e-07 | 0.0004013000236929 | 0.0003583459702994 | CELF1/DDX17/DDX5/RBM5/YTHDC1 | 5 |
| GO | B_9_1 | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | 8/59 | 338/18986 | 9.34269172075373e-06 | 0.0018114204240391 | 0.0016175309522762 | CDK13/CELF1/DDX17/DDX5/PNN/RBM5/RBM6/YTHDC1 | 8 |
| GO | B_9_1 | GO:0000398 | mRNA splicing, via spliceosome | 8/59 | 338/18986 | 9.34269172075373e-06 | 0.0018114204240391 | 0.0016175309522762 | CDK13/CELF1/DDX17/DDX5/PNN/RBM5/RBM6/YTHDC1 | 8 |
| reactome | B_9_1 | R-HSA-3899300 | SUMOylation of transcription cofactors | 4/34 | 45/11146 | 9.84125176638341e-06 | 0.0014860290167239 | 0.00120166863673734 | DDX17/DDX5/PHC3/UHRF2 | 4 |
| GO | B_9_1 | GO:0000375 | RNA splicing, via transesterification reactions | 8/59 | 342/18986 | 1.01765192361747e-05 | 0.0018114204240391 | 0.0016175309522762 | CDK13/CELF1/DDX17/DDX5/PNN/RBM5/RBM6/YTHDC1 | 8 |
| MeSH_gene2pubmed | B_9_1 | D022003 | Cell Nucleus Structures | 5/61 | 136/26076 | 1.68663243784299e-05 | 0.028014964792572 | 0.0261339257737355 | PNN/SENP6/SP100/YTHDC1/ZMYM2 | 5 |
| GO | B_9_1 | GO:0048024 | regulation of mRNA splicing, via spliceosome | 5/59 | 114/18986 | 2.76241341033765e-05 | 0.00409757989200085 | 0.00365898618386829 | CELF1/DDX17/DDX5/RBM5/YTHDC1 | 5 |
| GO | B_9_1 | GO:1903311 | regulation of mRNA metabolic process | 8/59 | 406/18986 | 3.4870068274915e-05 | 0.00443348010923919 | 0.00395893256354298 | CELF1/DDX17/DDX5/PUM1/RBM33/RBM5/RC3H2/YTHDC1 | 8 |
| GO | B_9_1 | GO:0016925 | protein sumoylation | 4/59 | 68/18986 | 5.90450690439698e-05 | 0.0063578859372706 | 0.00567735527219315 | SENP6/TRIM38/UHRF2/ZNF451 | 4 |