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Selected Module: B_7_4


Module Info

Module_Name B_7_4
Cell_Type B
Name B_7_4: RNA, Nuclear
Meta_Module B_1
Gene_Number 22

Genes:

NOP53, RPL13A, RPL17, RPL18A, RPL21, RPL23, RPL23A, RPL27, RPL27A, RPL31, RPL35, RPL37A, RPL38, RPL7, RPL9, RPS10, RPS11, RPS17, RPS20, RPS29, TPT1, UBA52


UMAP Visualizations


UMAP for B_7_4

UMAP for B_7_4


Word Cloud

Enriched TF

Wordcloud for B_7_4
TF p.adjust Genes
ZZZ3 2.02338402173262e-05 RPL17/RPL27/RPL37A/RPL7/RPS10/RPS20
NPM1 0.0116106518130812 RPL27A/RPL37A/RPS11/RPS20
EPC1 0.0116106518130812 RPL23A/RPS17/TPT1/UBA52
PER1 0.0116106518130812 RPL17/RPL21
MSX1 0.0156688509087623 RPL17/RPL21/RPS11
MCM3 0.017861168951138 NOP53/RPL13A/RPS11
ZNF532 0.025354117897857 RPL17/RPL21
CTR9 0.025354117897857 RPL9/TPT1


Functional Enrichment Results

enrichment_term
module ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
GO B_7_4 GO:2000059 negative regulation of ubiquitin-dependent protein catabolic process 2/22 56/18986 0.0019004778126322 0.028602804270621 0.0210918511649387 NOP53/RPL23 2
GO B_7_4 GO:0042255 ribosome assembly 2/22 58/18986 0.00203707164743955 0.028602804270621 0.0210918511649387 NOP53/RPL38 2
MeSH_gene2pubmed B_7_4 D016054 DNA, Protozoan 2/22 80/26076 0.00206329143768928 0.0189055075918506 0.0124757156697492 RPL21/RPL27 2
GO B_7_4 GO:0022618 protein-RNA complex assembly 3/22 225/18986 0.00214138641598232 0.028602804270621 0.0210918511649387 NOP53/RPL13A/RPL38 3
GO B_7_4 GO:0071826 protein-RNA complex organization 3/22 234/18986 0.00239381524876146 0.0298428967678929 0.0220063015851054 NOP53/RPL13A/RPL38 3
MeSH_gene2pubmed B_7_4 D012266 Ribose 2/22 89/26076 0.00254520507134941 0.0227911545025379 0.0150398481488829 RPL13A/RPS20 2
MeSH_gene2pubmed B_7_4 D038601 Ribosomal Protein S6 2/22 91/26076 0.00265883333247776 0.023279562955472 0.0153621481432049 RPL9/RPS11 2
MeSH_gene2pubmed B_7_4 D020537 RNA, Small Nucleolar 3/22 342/26076 0.00286227385287926 0.0245159977833571 0.0161780696032306 RPL13A/RPL7/RPS11 3
WikiPathways B_7_4 WP3888 VEGFA VEGFR2 signaling 5/21 432/8836 0.00289617192153808 0.0130327736469213 0.0106701070793508 RPL13A/RPL18A/RPL27/RPL7/RPS11 5
GO B_7_4 GO:0032040 small-subunit processome 2/22 74/19960 0.00298541558530996 0.00803765734506528 0.0048346811098137 RPS11/RPS17 2