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Selected Module: B_7_3
Module Info
| Module_Name | B_7_3 |
| Cell_Type | B |
| Name | B_7_3: Brefeldin A |
| Meta_Module | B_5 |
| Gene_Number | 48 |
Genes:
ACO2, ARF1, ATRAID, CANX, CISD2, CLINT1, CNPY2, COPB2, COPE, COX7A2, CREB3, DCPS, DPM3, DSTN, EIF4G1, EMC7, GANAB, GNL3, GPAA1, IER3IP1, IFI35, IFT27, ISOC2, LAP3, LGALS1, MESD, MPC1, MRPS14, NDUFC2, NUS1, PHPT1, PSMD8, RAB5IF, RER1, REXO2, RTN3, SEC13, SEC63, SLC35B1, SPTSSA, SRP19, SRP72, SURF4, TIMM17A, TMED2, TMEM205, TOP1, YIF1A
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| NRF2 | 0.00157846335581382 | CANX/EIF4G1/RAB5IF/REXO2/RTN3/YIF1A |
| AP1 | 0.0141292772092284 | DSTN/EIF4G1/REXO2/RTN3/YIF1A |
| TASOR | 0.0141292772092284 | ACO2/GNL3/MPC1/PSMD8/REXO2 |
| TCF11MAFG | 0.0320663285930519 | EIF4G1/RAB5IF/REXO2/RTN3 |
| MYCMAX | 0.0402032397859811 | LAP3/REXO2/SRP72/TOP1 |
| AP1 | 0.0402032397859811 | REXO2/RTN3/SLC35B1/YIF1A |
| AP1FJ | 0.0402032397859811 | DSTN/EIF4G1/REXO2/RTN3 |
| AAGWWRNYGGC | 0.0402032397859811 | ARF1/NUS1/PSMD8 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| reactome | B_7_3 | R-HSA-948021 | Transport to the Golgi and subsequent modification | 5/34 | 186/11146 | 0.00023034419178396 | 0.0117926239910164 | 0.0105680698639265 | ARF1/COPB2/COPE/SEC13/TMED2 | 5 |
| MeSH_gene2pubmed | B_7_3 | D020823 | ADP-Ribosylation Factor 1 | 4/48 | 164/26076 | 0.00023654815098025 | 0.0170630066240424 | 0.0150394824412709 | ARF1/COPB2/COPE/TMED2 | 4 |
| reactome | B_7_3 | R-HSA-6807878 | COPI-mediated anterograde transport | 4/34 | 101/11146 | 0.00023903967549357 | 0.0117926239910164 | 0.0105680698639265 | ARF1/COPB2/COPE/TMED2 | 4 |
| GO | B_7_3 | GO:0072599 | establishment of protein localization to endoplasmic reticulum | 3/48 | 50/18986 | 0.00027344090080159 | 0.0177052983269031 | 0.0157108587741265 | SEC63/SRP19/SRP72 | 3 |
| GO | B_7_3 | GO:0006890 | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | 3/48 | 52/18986 | 0.00030722728389267 | 0.0183627384295851 | 0.0162942405627288 | COPB2/COPE/RER1 | 3 |
| GO | B_7_3 | GO:0005793 | endoplasmic reticulum-Golgi intermediate compartment | 4/48 | 135/19960 | 0.00030919339421797 | 0.00414319148252081 | 0.0027013738652728 | RER1/SURF4/TMED2/YIF1A | 4 |
| reactome | B_7_3 | R-HSA-6811442 | Intra-Golgi and retrograde Golgi-to-ER traffic | 5/34 | 202/11146 | 0.00033754205072939 | 0.0142732067165572 | 0.0127910671855349 | ARF1/COPB2/COPE/SURF4/TMED2 | 5 |
| MeSH_gene2pubmed | B_7_3 | D037241 | Mannose-Binding Lectins | 4/48 | 181/26076 | 0.00034422386550541 | 0.0232781389048037 | 0.0205175540886781 | CANX/RER1/RTN3/SURF4 | 4 |
| GO | B_7_3 | GO:0030660 | Golgi-associated vesicle membrane | 3/48 | 57/19960 | 0.00034860919104489 | 0.00424669378181964 | 0.00276885768963888 | COPB2/COPE/TMED2 | 3 |
| MeSH_gene2pubmed | B_7_3 | D005959 | Glucosidases | 3/48 | 78/26076 | 0.00040417559348637 | 0.025724587773662 | 0.0226738753992974 | CANX/GANAB/SEC63 | 3 |