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Selected Module: B_7_3
Module Info
| Module_Name | B_7_3 |
| Cell_Type | B |
| Name | B_7_3: Brefeldin A |
| Meta_Module | B_5 |
| Gene_Number | 48 |
Genes:
ACO2, ARF1, ATRAID, CANX, CISD2, CLINT1, CNPY2, COPB2, COPE, COX7A2, CREB3, DCPS, DPM3, DSTN, EIF4G1, EMC7, GANAB, GNL3, GPAA1, IER3IP1, IFI35, IFT27, ISOC2, LAP3, LGALS1, MESD, MPC1, MRPS14, NDUFC2, NUS1, PHPT1, PSMD8, RAB5IF, RER1, REXO2, RTN3, SEC13, SEC63, SLC35B1, SPTSSA, SRP19, SRP72, SURF4, TIMM17A, TMED2, TMEM205, TOP1, YIF1A
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| NRF2 | 0.00157846335581382 | CANX/EIF4G1/RAB5IF/REXO2/RTN3/YIF1A |
| AP1 | 0.0141292772092284 | DSTN/EIF4G1/REXO2/RTN3/YIF1A |
| TASOR | 0.0141292772092284 | ACO2/GNL3/MPC1/PSMD8/REXO2 |
| TCF11MAFG | 0.0320663285930519 | EIF4G1/RAB5IF/REXO2/RTN3 |
| MYCMAX | 0.0402032397859811 | LAP3/REXO2/SRP72/TOP1 |
| AP1 | 0.0402032397859811 | REXO2/RTN3/SLC35B1/YIF1A |
| AP1FJ | 0.0402032397859811 | DSTN/EIF4G1/REXO2/RTN3 |
| AAGWWRNYGGC | 0.0402032397859811 | ARF1/NUS1/PSMD8 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| MeSH_gene2pubmed | B_7_3 | D018000 | Receptors, Peptide | 7/48 | 366/26076 | 4.54850706126856e-06 | 0.00098429692805851 | 0.00086756787315985 | ARF1/COPB2/COPE/GANAB/RER1/SRP72/TMED2 | 7 |
| GO | B_7_3 | GO:0030663 | COPI-coated vesicle membrane | 3/48 | 18/19960 | 1.03836564522156e-05 | 0.00046380332153229 | 0.00030240122299434 | COPB2/COPE/TMED2 | 3 |
| MeSH_gene2pubmed | B_7_3 | D002477 | Cells | 5/48 | 160/26076 | 1.13033456499325e-05 | 0.00203836999887116 | 0.00179663704541032 | ARF1/COPB2/COPE/DSTN/SEC13 | 5 |
| reactome | B_7_3 | R-HSA-6811434 | COPI-dependent Golgi-to-ER retrograde traffic | 5/34 | 99/11146 | 1.13282155414284e-05 | 0.0016765759001314 | 0.00150247911391576 | ARF1/COPB2/COPE/SURF4/TMED2 | 5 |
| GO | B_7_3 | GO:0030120 | vesicle coat | 4/48 | 63/19960 | 1.579815328598e-05 | 0.00052923813508032 | 0.00034506492703587 | CLINT1/COPB2/COPE/SEC13 | 4 |
| MeSH_gene2pubmed | B_7_3 | D018699 | Coated Vesicles | 4/48 | 82/26076 | 1.59048098943156e-05 | 0.00245842918652136 | 0.00216688086680451 | ARF1/COPB2/COPE/TMED2 | 4 |
| MeSH_gene2pubmed | B_7_3 | D003517 | Cyclopentanes | 5/48 | 177/26076 | 1.84071325930723e-05 | 0.00248956468321303 | 0.00219432396438467 | ARF1/CANX/COPB2/COPE/RER1 | 5 |
| MeSH_gene2pubmed | B_7_3 | D022181 | COP-Coated Vesicles | 4/48 | 90/26076 | 2.29859653909639e-05 | 0.00276342383922477 | 0.00243570580634074 | ARF1/COPB2/SEC13/SURF4 | 4 |
| GO | B_7_3 | GO:0030137 | COPI-coated vesicle | 3/48 | 25/19960 | 2.89233959565031e-05 | 0.00077514701163428 | 0.00050539828723994 | COPB2/COPE/TMED2 | 3 |
| MeSH_gene2pubmed | B_7_3 | D008361 | Mannosidases | 4/48 | 105/26076 | 4.21413166031761e-05 | 0.00455969045646365 | 0.00401895082552395 | CANX/COPB2/COPE/GANAB | 4 |