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Selected Module: B_5_1
Module Info
| Module_Name | B_5_1 |
| Cell_Type | B |
| Name | B_5_1: Parkinson disease |
| Meta_Module | B_3 |
| Gene_Number | 42 |
Genes:
ADRM1, AHCY, ATG3, ATP5MC1, CALM3, CLPP, COX5B, EIF2S1, ELOC, ETFB, GTF3C6, LAGE3, MRPL27, MRPL37, MRPL41, MRPL57, MRPS15, MRPS34, MTCH2, NDUFA6, NUDT21, PDHA1, PGAM1, PRDX3, PRDX6, PSMA3, PSMA4, PSMB4, PSMB6, PSMC3, PSMD1, PSMD11, PSMD3, PSMD7, SLC25A11, SNF8, SUCLG1, TIMM8B, TMEM126A, TRAPPC2L, TXNL4A, VDAC3
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| TGASTMAGC | 0.0393301650202121 | PSMA3/PSMD1/PSMD11/PSMD7 |
| TGACCTTG | 0.0393301650202121 | ATP5MC1/COX5B/MTCH2/TIMM8B |
| SF1 | 0.0393301650202121 | ATP5MC1/COX5B/MTCH2/TIMM8B |
| ZMYM2 | 0.0468821792425049 | ADRM1/AHCY/CALM3 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_5_1 | GO:0000313 | organellar ribosome | 6/42 | 88/19960 | 2.85306461779662e-08 | 4.48338725653755e-07 | 2.57419364011725e-07 | MRPL27/MRPL37/MRPL41/MRPL57/MRPS15/MRPS34 | 6 |
| GO | B_5_1 | GO:0005761 | mitochondrial ribosome | 6/42 | 88/19960 | 2.85306461779662e-08 | 4.48338725653755e-07 | 2.57419364011725e-07 | MRPL27/MRPL37/MRPL41/MRPL57/MRPS15/MRPS34 | 6 |
| reactome | B_5_1 | R-HSA-69275 | G2/M Transition | 9/41 | 197/11146 | 3.01296812122104e-08 | 9.03890436366313e-08 | 5.05732913661569e-08 | PSMA3/PSMA4/PSMB4/PSMB6/PSMC3/PSMD1/PSMD11/PSMD3/PSMD7 | 9 |
| reactome | B_5_1 | R-HSA-453274 | Mitotic G2-G2/M phases | 9/41 | 199/11146 | 3.28870702043263e-08 | 9.77803069467917e-08 | 5.47087540053173e-08 | PSMA3/PSMA4/PSMB4/PSMB6/PSMC3/PSMD1/PSMD11/PSMD3/PSMD7 | 9 |
| reactome | B_5_1 | R-HSA-5673001 | RAF/MAP kinase cascade | 10/41 | 280/11146 | 4.80431089779874e-08 | 1.41578365395308e-07 | 7.92140688318936e-08 | CALM3/PSMA3/PSMA4/PSMB4/PSMB6/PSMC3/PSMD1/PSMD11/PSMD3/PSMD7 | 10 |
| MeSH_gene2pubmed | B_5_1 | D016192 | Resting Phase, Cell Cycle | 9/42 | 473/26076 | 5.16655111201356e-08 | 1.31139223813756e-06 | 1.0988918309453e-06 | PSMA3/PSMA4/PSMB4/PSMB6/PSMC3/PSMD1/PSMD11/PSMD3/PSMD7 | 9 |
| GO | B_5_1 | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | 10/42 | 467/18986 | 5.35209340717378e-08 | 2.9811160277958e-05 | 2.37182244675807e-05 | ADRM1/PSMA3/PSMA4/PSMB4/PSMB6/PSMC3/PSMD1/PSMD11/PSMD3/PSMD7 | 10 |
| reactome | B_5_1 | R-HSA-5684996 | MAPK1/MAPK3 signaling | 10/41 | 286/11146 | 5.8680954040876e-08 | 1.71359739337245e-07 | 9.58769523081789e-08 | CALM3/PSMA3/PSMA4/PSMB4/PSMB6/PSMC3/PSMD1/PSMD11/PSMD3/PSMD7 | 10 |
| reactome | B_5_1 | R-HSA-5357801 | Programmed Cell Death | 9/41 | 213/11146 | 5.91782883597093e-08 | 1.71359739337245e-07 | 9.58769523081789e-08 | PSMA3/PSMA4/PSMB4/PSMB6/PSMC3/PSMD1/PSMD11/PSMD3/PSMD7 | 9 |
| GO | B_5_1 | GO:0005839 | proteasome core complex | 4/42 | 20/19960 | 8.00475939649244e-08 | 1.00995655185263e-06 | 5.79879359915387e-07 | PSMA3/PSMA4/PSMB4/PSMB6 | 4 |