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Selected Module: B_3_2
Module Info
| Module_Name | B_3_2 |
| Cell_Type | B |
| Name | B_3_2: cytoplasmic translation |
| Meta_Module | B_1 |
| Gene_Number | 28 |
Genes:
COMMD6, EIF3E, EIF3H, EIF3L, NSA2, RACK1, RPL10A, RPL22, RPL26, RPL28, RPL34, RPL35A, RPL36, RPL36A, RPL37, RPL39, RPL41, RPL6, RPLP2, RPS16, RPS18, RPS21, RPS25, RPS27, RPS28, RPS6, RPSA, TOMM7
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| FOXR2 | 3.13630426946188e-14 | EIF3L/RACK1/RPL34/RPL6/RPLP2/RPS16/RPS18/RPS21/RPS25/RPS27/RPS6 |
| ZZZ3 | 1.25683913485967e-09 | NSA2/RPL10A/RPL35A/RPL36/RPL37/RPL39/RPL41/RPL6/RPS18 |
| GTF2E2 | 7.1034646492613e-06 | RACK1/RPL36/RPL36A/RPL37/RPL41/RPS28/RPS6 |
| GGAANCGGAANY | 0.00016412920454788 | COMMD6/EIF3H/RACK1/RPL28 |
| PSMB5 | 0.00038344810186323 | RPL10A/RPL28/RPS27/RPS28/RPSA |
| CREB3L2 | 0.00038344810186323 | NSA2/RACK1/RPL35A/RPL37 |
| EPC1 | 0.00089884638291751 | EIF3E/RPL10A/RPL26/RPL35A/RPSA |
| ZNF101 | 0.00223727277630267 | NSA2/RPL26/RPL36/RPS16/TOMM7 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_3_2 | GO:0005791 | rough endoplasmic reticulum | 3/28 | 58/19960 | 7.24403076835032e-05 | 0.00013401456921448 | 3.43138299553436e-05 | RPL6/RPS21/RPS28 | 3 |
| GO | B_3_2 | GO:0042255 | ribosome assembly | 3/28 | 58/18986 | 8.39486538204618e-05 | 0.00218266499933201 | 0.00174015023303953 | RPS27/RPS28/RPSA | 3 |
| MeSH_gene2pubmed | B_3_2 | D012329 | RNA, Bacterial | 3/28 | 82/26076 | 9.2767301680548e-05 | 0.00252189627531564 | 0.00196384580165838 | RPL22/RPS18/RPS21 | 3 |
| GO | B_3_2 | GO:0042273 | ribosomal large subunit biogenesis | 3/28 | 64/18986 | 0.00011268436059426 | 0.0027205224200615 | 0.00216896212873169 | NSA2/RPL26/RPL35A | 3 |
| MeSH_gene2pubmed | B_3_2 | D015852 | Eukaryotic Initiation Factor-2 | 4/28 | 269/26076 | 0.00018657313972911 | 0.00475820503900593 | 0.003705299492586 | EIF3E/EIF3H/RPS16/RPS6 | 4 |
| MeSH_gene2pubmed | B_3_2 | D010788 | Photosynthesis | 2/28 | 19/26076 | 0.00018799447701794 | 0.00475820503900593 | 0.003705299492586 | RPS18/RPS21 | 2 |
| MeSH_gene2pubmed | B_3_2 | D039665 | Prokaryotic Initiation Factor-3 | 2/28 | 22/26076 | 0.00025345181148216 | 0.00620112098759684 | 0.00482892398718641 | EIF3E/EIF3L | 2 |
| GO | B_3_2 | GO:0008135 | translation factor activity, RNA binding | 3/28 | 83/18737 | 0.00025347412100734 | 0.00490049967280858 | 0.00320177837061904 | EIF3E/EIF3H/EIF3L | 3 |
| MeSH_gene2pubmed | B_3_2 | D016825 | Chlamydomonas reinhardtii | 2/28 | 24/26076 | 0.00030242350369908 | 0.00716060811984275 | 0.00557609380334808 | RPL10A/RPS18 | 2 |
| MeSH_gene2pubmed | B_3_2 | D011198 | Solanum tuberosum | 2/28 | 26/26076 | 0.00035564189990266 | 0.00815753607901734 | 0.00635241946207717 | RPS16/RPS18 | 2 |