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Selected Module: B_3_1
Module Info
| Module_Name | B_3_1 |
| Cell_Type | B |
| Name | B_3_1: Protein processing in endoplasmic reticulum |
| Meta_Module | B_2 |
| Gene_Number | 47 |
Genes:
ALG5, ARF4, ARFGAP3, ATF4, B4GALT3, CD59, COPG1, DAD1, DDOST, DERL1, DERL2, DERL3, DNAJC1, ERGIC3, ERLEC1, FKBP2, HM13, IDH2, ISG20, ITM2C, KDELR1, KLF13, LRPAP1, MGAT1, MORF4L2, NUCB1, NUCB2, OS9, P4HB, RPN1, RPN2, SAR1B, SEC61A1, SEC61B, SRP54, SRPRA, SRPRB, SSR1, SSR2, ST6GALNAC4, TMBIM6, TMCO1, TMEM208, TNFRSF17, TXNDC15, UBE2J1, ZBP1
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| XBP1 | 0.00087721865727556 | ARFGAP3/KDELR1/MORF4L2/SEC61A1/SRPRA |
| HTF | 0.00088044164334352 | HM13/MORF4L2/SEC61A1/SRP54 |
| STAT1 | 0.0049985900069652 | DDOST/ITM2C/MORF4L2/NUCB1/TMCO1 |
| GABP | 0.0049985900069652 | DDOST/DERL1/SRP54/TMCO1/TMEM208 |
| NRF2 | 0.0049985900069652 | DDOST/DNAJC1/ITM2C/TMCO1/TMEM208 |
| FOXO4 | 0.0206509811700283 | COPG1/ERLEC1/FKBP2/SRP54/TMCO1 |
| FOXR2 | 0.0239983226037003 | HM13/P4HB/SRP54/SSR2 |
| GGAANCGGAANY | 0.0249993647968756 | SEC61A1/SRP54/TMCO1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| reactome | B_3_1 | R-HSA-6807878 | COPI-mediated anterograde transport | 5/36 | 101/11146 | 1.66821747185129e-05 | 0.00017440455387536 | 0.00010855386419702 | ARF4/ARFGAP3/CD59/COPG1/KDELR1 | 5 |
| GO | B_3_1 | GO:0051051 | negative regulation of transport | 8/47 | 467/18986 | 1.70878387963472e-05 | 0.00027779943643204 | 0.00021687422472356 | ATF4/DERL2/DERL3/ERLEC1/LRPAP1/OS9/TMBIM6/UBE2J1 | 8 |
| GO | B_3_1 | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | 5/47 | 132/18986 | 1.82690813173294e-05 | 0.00028875297971001 | 0.00022542550631324 | ARF4/COPG1/ERGIC3/P4HB/SAR1B | 5 |
| reactome | B_3_1 | R-HSA-382556 | ABC-family proteins mediated transport | 5/36 | 103/11146 | 1.83516134409016e-05 | 0.00017586962880864 | 0.00010946576438432 | DERL1/DERL2/DERL3/ERLEC1/OS9 | 5 |
| MeSH_gene2pubmed | B_3_1 | D019673 | Genes, T-Cell Receptor alpha | 3/47 | 29/26076 | 1.94031762201601e-05 | 0.00143842213045454 | 0.00129218345494259 | DAD1/DERL1/DERL2 | 3 |
| GO | B_3_1 | GO:1904950 | negative regulation of establishment of protein localization | 5/47 | 136/18986 | 2.11022698834262e-05 | 0.00032451869090998 | 0.00025334730841553 | DERL2/DERL3/ERLEC1/OS9/UBE2J1 | 5 |
| GO | B_3_1 | GO:0044322 | endoplasmic reticulum quality control compartment | 3/47 | 25/19960 | 2.7138105611335e-05 | 0.00042064063697569 | 0.000285664269593 | DERL1/ERLEC1/SEC61B | 3 |
| MeSH_gene2pubmed | B_3_1 | D037281 | Calnexin | 5/47 | 201/26076 | 3.05282105536592e-05 | 0.00212171063347932 | 0.00190600472469885 | DERL1/KDELR1/P4HB/SEC61A1/SEC61B | 5 |
| MeSH_gene2pubmed | B_3_1 | D008361 | Mannosidases | 4/47 | 105/26076 | 3.87491125217228e-05 | 0.00253464783083269 | 0.0022769602342486 | B4GALT3/COPG1/IDH2/KDELR1 | 4 |
| GO | B_3_1 | GO:0033116 | endoplasmic reticulum-Golgi intermediate compartment membrane | 4/47 | 81/19960 | 3.93068858521676e-05 | 0.00052222005489308 | 0.00035464859415489 | CD59/ERGIC3/KDELR1/MGAT1 | 4 |