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Selected Module: B_3_1
Module Info
| Module_Name | B_3_1 |
| Cell_Type | B |
| Name | B_3_1: Protein processing in endoplasmic reticulum |
| Meta_Module | B_2 |
| Gene_Number | 47 |
Genes:
ALG5, ARF4, ARFGAP3, ATF4, B4GALT3, CD59, COPG1, DAD1, DDOST, DERL1, DERL2, DERL3, DNAJC1, ERGIC3, ERLEC1, FKBP2, HM13, IDH2, ISG20, ITM2C, KDELR1, KLF13, LRPAP1, MGAT1, MORF4L2, NUCB1, NUCB2, OS9, P4HB, RPN1, RPN2, SAR1B, SEC61A1, SEC61B, SRP54, SRPRA, SRPRB, SSR1, SSR2, ST6GALNAC4, TMBIM6, TMCO1, TMEM208, TNFRSF17, TXNDC15, UBE2J1, ZBP1
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| XBP1 | 0.00087721865727556 | ARFGAP3/KDELR1/MORF4L2/SEC61A1/SRPRA |
| HTF | 0.00088044164334352 | HM13/MORF4L2/SEC61A1/SRP54 |
| STAT1 | 0.0049985900069652 | DDOST/ITM2C/MORF4L2/NUCB1/TMCO1 |
| GABP | 0.0049985900069652 | DDOST/DERL1/SRP54/TMCO1/TMEM208 |
| NRF2 | 0.0049985900069652 | DDOST/DNAJC1/ITM2C/TMCO1/TMEM208 |
| FOXO4 | 0.0206509811700283 | COPG1/ERLEC1/FKBP2/SRP54/TMCO1 |
| FOXR2 | 0.0239983226037003 | HM13/P4HB/SRP54/SSR2 |
| GGAANCGGAANY | 0.0249993647968756 | SEC61A1/SRP54/TMCO1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| reactome | B_3_1 | R-HSA-5619084 | ABC transporter disorders | 5/36 | 78/11146 | 4.6902430320333e-06 | 5.99308831870922e-05 | 3.73025176816684e-05 | DERL1/DERL2/DERL3/ERLEC1/OS9 | 5 |
| GO | B_3_1 | GO:0006617 | SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 3/47 | 14/18986 | 5.07725412703784e-06 | 9.02799249463917e-05 | 7.0480304000328e-05 | SRP54/SRPRA/SRPRB | 3 |
| MeSH_gene2pubmed | B_3_1 | D014166 | Transferases | 5/47 | 148/26076 | 6.96689335967345e-06 | 0.0007428341856704 | 0.00066731317891065 | DAD1/DDOST/P4HB/RPN1/RPN2 | 5 |
| MeSH_gene2pubmed | B_3_1 | D018870 | Endoplasmic Reticulum, Rough | 4/47 | 69/26076 | 7.34817989422164e-06 | 0.0007428341856704 | 0.00066731317891065 | DAD1/SRPRB/SSR1/SSR2 | 4 |
| reactome | B_3_1 | R-HSA-199977 | ER to Golgi Anterograde Transport | 6/36 | 155/11146 | 9.05747512466445e-06 | 0.00010416096393364 | 6.4832453523914e-05 | ARF4/ARFGAP3/CD59/COPG1/KDELR1/SAR1B | 6 |
| MeSH_gene2pubmed | B_3_1 | D006602 | D006602 | 4/47 | 74/26076 | 9.71596773396621e-06 | 0.00090034634334753 | 0.00080881169995911 | DAD1/DDOST/RPN1/RPN2 | 4 |
| GO | B_3_1 | GO:0048193 | Golgi vesicle transport | 7/47 | 308/18986 | 9.9584195207953e-06 | 0.00017170729416159 | 0.00013404953868502 | ARF4/ARFGAP3/COPG1/ERGIC3/KDELR1/P4HB/SAR1B | 7 |
| MeSH_gene2pubmed | B_3_1 | D019704 | Protein Disulfide-Isomerases | 5/47 | 165/26076 | 1.18120368058386e-05 | 0.00101038345600711 | 0.00090766177560654 | ATF4/DERL1/P4HB/SSR1/SSR2 | 5 |
| GO | B_3_1 | GO:0051224 | negative regulation of protein transport | 5/47 | 121/18986 | 1.19816610567768e-05 | 0.00020051662180311 | 0.00015654058718141 | DERL2/DERL3/ERLEC1/OS9/UBE2J1 | 5 |
| MeSH_gene2pubmed | B_3_1 | D008862 | Microsomes, Liver | 6/47 | 302/26076 | 1.65397398779261e-05 | 0.00131372791030384 | 0.00118016640181593 | DDOST/LRPAP1/P4HB/SRPRA/SSR1/SSR2 | 6 |