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Selected Module: B_3_1
Module Info
| Module_Name | B_3_1 |
| Cell_Type | B |
| Name | B_3_1: Protein processing in endoplasmic reticulum |
| Meta_Module | B_2 |
| Gene_Number | 47 |
Genes:
ALG5, ARF4, ARFGAP3, ATF4, B4GALT3, CD59, COPG1, DAD1, DDOST, DERL1, DERL2, DERL3, DNAJC1, ERGIC3, ERLEC1, FKBP2, HM13, IDH2, ISG20, ITM2C, KDELR1, KLF13, LRPAP1, MGAT1, MORF4L2, NUCB1, NUCB2, OS9, P4HB, RPN1, RPN2, SAR1B, SEC61A1, SEC61B, SRP54, SRPRA, SRPRB, SSR1, SSR2, ST6GALNAC4, TMBIM6, TMCO1, TMEM208, TNFRSF17, TXNDC15, UBE2J1, ZBP1
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| XBP1 | 0.00087721865727556 | ARFGAP3/KDELR1/MORF4L2/SEC61A1/SRPRA |
| HTF | 0.00088044164334352 | HM13/MORF4L2/SEC61A1/SRP54 |
| STAT1 | 0.0049985900069652 | DDOST/ITM2C/MORF4L2/NUCB1/TMCO1 |
| GABP | 0.0049985900069652 | DDOST/DERL1/SRP54/TMCO1/TMEM208 |
| NRF2 | 0.0049985900069652 | DDOST/DNAJC1/ITM2C/TMCO1/TMEM208 |
| FOXO4 | 0.0206509811700283 | COPG1/ERLEC1/FKBP2/SRP54/TMCO1 |
| FOXR2 | 0.0239983226037003 | HM13/P4HB/SRP54/SSR2 |
| GGAANCGGAANY | 0.0249993647968756 | SEC61A1/SRP54/TMCO1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_3_1 | GO:0006986 | response to unfolded protein | 7/47 | 143/18986 | 5.8006425719426e-08 | 1.43502853192841e-06 | 1.12030716950104e-06 | ATF4/DERL1/DERL2/DERL3/ERLEC1/OS9/TMBIM6 | 7 |
| GO | B_3_1 | GO:0030968 | endoplasmic reticulum unfolded protein response | 6/47 | 85/18986 | 6.24038385222315e-08 | 1.47949100496457e-06 | 1.15501841475358e-06 | ATF4/DERL1/DERL2/DERL3/ERLEC1/OS9 | 6 |
| MeSH_gene2pubmed | B_3_1 | D000515 | alpha 1-Antitrypsin | 8/47 | 313/26076 | 8.25189557102706e-08 | 3.05870262499403e-05 | 2.74773645505427e-05 | DERL1/DERL2/DERL3/OS9/SAR1B/SSR1/SSR2/TXNDC15 | 8 |
| reactome | B_3_1 | R-HSA-9772573 | Late SARS-CoV-2 Infection Events | 6/36 | 70/11146 | 8.28148573462243e-08 | 1.58728476580263e-06 | 9.87966719218114e-07 | DAD1/DDOST/MGAT1/RPN1/RPN2/ST6GALNAC4 | 6 |
| GO | B_3_1 | GO:0045047 | protein targeting to ER | 5/47 | 46/18986 | 9.48749799678887e-08 | 2.15935454406915e-06 | 1.68577859142943e-06 | SEC61A1/SEC61B/SRP54/SRPRA/SRPRB | 5 |
| reactome | B_3_1 | R-HSA-948021 | Transport to the Golgi and subsequent modification | 8/36 | 186/11146 | 1.04979511388958e-07 | 1.72466340139002e-06 | 1.07347470292468e-06 | ARF4/ARFGAP3/B4GALT3/CD59/COPG1/KDELR1/MGAT1/SAR1B | 8 |
| GO | B_3_1 | GO:0035966 | response to topologically incorrect protein | 7/47 | 160/18986 | 1.2539508201363e-07 | 2.74422314099059e-06 | 2.14237751456485e-06 | ATF4/DERL1/DERL2/DERL3/ERLEC1/OS9/TMBIM6 | 7 |
| GO | B_3_1 | GO:0072599 | establishment of protein localization to endoplasmic reticulum | 5/47 | 50/18986 | 1.45568979384557e-07 | 3.06773145443751e-06 | 2.39493603509875e-06 | SEC61A1/SEC61B/SRP54/SRPRA/SRPRB | 5 |
| GO | B_3_1 | GO:0032387 | negative regulation of intracellular transport | 5/47 | 53/18986 | 1.96072888348641e-07 | 3.9844811953706e-06 | 3.11063003320025e-06 | DERL2/DERL3/ERLEC1/OS9/UBE2J1 | 5 |
| MeSH_gene2pubmed | B_3_1 | D018000 | Receptors, Peptide | 8/47 | 366/26076 | 2.72241404357817e-07 | 7.56831104114733e-05 | 6.79887086146234e-05 | COPG1/KDELR1/LRPAP1/SRP54/SRPRA/SRPRB/SSR1/SSR2 | 8 |