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Selected Module: B_3_1
Module Info
| Module_Name | B_3_1 |
| Cell_Type | B |
| Name | B_3_1: Protein processing in endoplasmic reticulum |
| Meta_Module | B_2 |
| Gene_Number | 47 |
Genes:
ALG5, ARF4, ARFGAP3, ATF4, B4GALT3, CD59, COPG1, DAD1, DDOST, DERL1, DERL2, DERL3, DNAJC1, ERGIC3, ERLEC1, FKBP2, HM13, IDH2, ISG20, ITM2C, KDELR1, KLF13, LRPAP1, MGAT1, MORF4L2, NUCB1, NUCB2, OS9, P4HB, RPN1, RPN2, SAR1B, SEC61A1, SEC61B, SRP54, SRPRA, SRPRB, SSR1, SSR2, ST6GALNAC4, TMBIM6, TMCO1, TMEM208, TNFRSF17, TXNDC15, UBE2J1, ZBP1
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| XBP1 | 0.00087721865727556 | ARFGAP3/KDELR1/MORF4L2/SEC61A1/SRPRA |
| HTF | 0.00088044164334352 | HM13/MORF4L2/SEC61A1/SRP54 |
| STAT1 | 0.0049985900069652 | DDOST/ITM2C/MORF4L2/NUCB1/TMCO1 |
| GABP | 0.0049985900069652 | DDOST/DERL1/SRP54/TMCO1/TMEM208 |
| NRF2 | 0.0049985900069652 | DDOST/DNAJC1/ITM2C/TMCO1/TMEM208 |
| FOXO4 | 0.0206509811700283 | COPG1/ERLEC1/FKBP2/SRP54/TMCO1 |
| FOXR2 | 0.0239983226037003 | HM13/P4HB/SRP54/SSR2 |
| GGAANCGGAANY | 0.0249993647968756 | SEC61A1/SRP54/TMCO1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| WikiPathways | B_3_1 | WP5153 | N glycan biosynthesis | 7/28 | 57/8836 | 3.38815124007855e-10 | 1.52466805803535e-08 | 1.21260149644916e-08 | ALG5/B4GALT3/DAD1/DDOST/MGAT1/RPN1/RPN2 | 7 |
| MeSH_gene2pubmed | B_3_1 | D011691 | Puromycin | 7/47 | 104/26076 | 7.21568324078949e-10 | 5.87479573114542e-07 | 5.27752853924366e-07 | DAD1/DDOST/DERL1/DERL2/RPN1/RPN2/SEC61A1 | 7 |
| MeSH_gene2pubmed | B_3_1 | D020126 | Brefeldin A | 11/47 | 499/26076 | 1.05661793725637e-09 | 5.87479573114542e-07 | 5.27752853924366e-07 | COPG1/DERL1/ERGIC3/FKBP2/KDELR1/NUCB1/NUCB2/P4HB/SAR1B/SEC61A1/SEC61B | 11 |
| GO | B_3_1 | GO:0070972 | protein localization to endoplasmic reticulum | 7/47 | 83/18986 | 1.28751822478888e-09 | 4.8839857993658e-08 | 3.81286098849759e-08 | KDELR1/OS9/SEC61A1/SEC61B/SRP54/SRPRA/SRPRB | 7 |
| reactome | B_3_1 | R-HSA-9694548 | Maturation of spike protein | 6/36 | 37/11146 | 1.5848980103656e-09 | 6.07544237306814e-08 | 3.78151104227582e-08 | DAD1/DDOST/MGAT1/RPN1/RPN2/ST6GALNAC4 | 6 |
| KEGG | B_3_1 | hsa00510 | N-Glycan biosynthesis | 7/36 | 54/8541 | 1.95821969078372e-09 | 5.76540885820751e-08 | 5.63536204185697e-08 | ALG5/B4GALT3/DAD1/DDOST/MGAT1/RPN1/RPN2 | 7 |
| GO | B_3_1 | GO:0009100 | glycoprotein metabolic process | 11/47 | 392/18986 | 2.26007985507209e-09 | 8.03740898460013e-08 | 6.27469538710805e-08 | ALG5/B4GALT3/DAD1/DDOST/DERL3/ITM2C/MGAT1/RPN1/RPN2/ST6GALNAC4/UBE2J1 | 11 |
| KEGG | B_3_1 | hsa03060 | Protein export | 6/36 | 31/8541 | 2.47088951066036e-09 | 5.76540885820751e-08 | 5.63536204185697e-08 | SEC61A1/SEC61B/SRP54/SRPRA/SRPRB/TMEM208 | 6 |
| GO | B_3_1 | GO:0030867 | rough endoplasmic reticulum membrane | 5/47 | 26/19960 | 3.68543663764307e-09 | 8.56864018252014e-08 | 5.81911048048906e-08 | ALG5/SEC61A1/SEC61B/SRPRA/SRPRB | 5 |
| GO | B_3_1 | GO:0070861 | regulation of protein exit from endoplasmic reticulum | 5/47 | 25/18986 | 3.82261532877927e-09 | 1.27945183651494e-07 | 9.98850568882262e-08 | DERL2/DERL3/ERLEC1/OS9/UBE2J1 | 5 |