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Selected Module: B_3_1
Module Info
| Module_Name | B_3_1 |
| Cell_Type | B |
| Name | B_3_1: Protein processing in endoplasmic reticulum |
| Meta_Module | B_2 |
| Gene_Number | 47 |
Genes:
ALG5, ARF4, ARFGAP3, ATF4, B4GALT3, CD59, COPG1, DAD1, DDOST, DERL1, DERL2, DERL3, DNAJC1, ERGIC3, ERLEC1, FKBP2, HM13, IDH2, ISG20, ITM2C, KDELR1, KLF13, LRPAP1, MGAT1, MORF4L2, NUCB1, NUCB2, OS9, P4HB, RPN1, RPN2, SAR1B, SEC61A1, SEC61B, SRP54, SRPRA, SRPRB, SSR1, SSR2, ST6GALNAC4, TMBIM6, TMCO1, TMEM208, TNFRSF17, TXNDC15, UBE2J1, ZBP1
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| XBP1 | 0.00087721865727556 | ARFGAP3/KDELR1/MORF4L2/SEC61A1/SRPRA |
| HTF | 0.00088044164334352 | HM13/MORF4L2/SEC61A1/SRP54 |
| STAT1 | 0.0049985900069652 | DDOST/ITM2C/MORF4L2/NUCB1/TMCO1 |
| GABP | 0.0049985900069652 | DDOST/DERL1/SRP54/TMCO1/TMEM208 |
| NRF2 | 0.0049985900069652 | DDOST/DNAJC1/ITM2C/TMCO1/TMEM208 |
| FOXO4 | 0.0206509811700283 | COPG1/ERLEC1/FKBP2/SRP54/TMCO1 |
| FOXR2 | 0.0239983226037003 | HM13/P4HB/SRP54/SSR2 |
| GGAANCGGAANY | 0.0249993647968756 | SEC61A1/SRP54/TMCO1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_3_1 | GO:0034976 | response to endoplasmic reticulum stress | 12/47 | 277/18986 | 2.43269146998007e-12 | 2.30700241069776e-10 | 1.80104526373963e-10 | ATF4/DERL1/DERL2/DERL3/ERLEC1/HM13/OS9/P4HB/SEC61B/TMBIM6/TMCO1/UBE2J1 | 12 |
| GO | B_3_1 | GO:0006487 | protein N-linked glycosylation | 8/47 | 74/18986 | 1.00452959314289e-11 | 8.16539054997576e-10 | 6.37460884671126e-10 | ALG5/DAD1/DDOST/DERL3/MGAT1/RPN1/RPN2/UBE2J1 | 8 |
| GO | B_3_1 | GO:0070862 | negative regulation of protein exit from endoplasmic reticulum | 5/47 | 10/18986 | 1.86398982217218e-11 | 1.32576276101996e-09 | 1.03500487494297e-09 | DERL2/DERL3/ERLEC1/OS9/UBE2J1 | 5 |
| GO | B_3_1 | GO:0005793 | endoplasmic reticulum-Golgi intermediate compartment | 9/47 | 135/19960 | 2.47945856886571e-11 | 7.6863215634837e-10 | 5.21991277655939e-10 | CD59/COPG1/ERGIC3/KDELR1/LRPAP1/MGAT1/NUCB1/NUCB2/P4HB | 9 |
| GO | B_3_1 | GO:0006486 | protein glycosylation | 10/47 | 223/18986 | 1.4464551634078e-10 | 7.60362318758443e-09 | 5.93604474176418e-09 | ALG5/B4GALT3/DAD1/DDOST/DERL3/MGAT1/RPN1/RPN2/ST6GALNAC4/UBE2J1 | 10 |
| GO | B_3_1 | GO:0043413 | macromolecule glycosylation | 10/47 | 223/18986 | 1.4464551634078e-10 | 7.60362318758443e-09 | 5.93604474176418e-09 | ALG5/B4GALT3/DAD1/DDOST/DERL3/MGAT1/RPN1/RPN2/ST6GALNAC4/UBE2J1 | 10 |
| GO | B_3_1 | GO:1904152 | regulation of retrograde protein transport, ER to cytosol | 5/47 | 14/18986 | 1.46994472870701e-10 | 7.60362318758443e-09 | 5.93604474176418e-09 | DERL2/DERL3/ERLEC1/OS9/UBE2J1 | 5 |
| GO | B_3_1 | GO:0009101 | glycoprotein biosynthetic process | 11/47 | 322/18986 | 2.84744679126439e-10 | 1.30834173934813e-08 | 1.02140452132996e-08 | ALG5/B4GALT3/DAD1/DDOST/DERL3/ITM2C/MGAT1/RPN1/RPN2/ST6GALNAC4/UBE2J1 | 11 |
| GO | B_3_1 | GO:0036503 | ERAD pathway | 8/47 | 113/18986 | 3.17546378973129e-10 | 1.30834173934813e-08 | 1.02140452132996e-08 | DERL1/DERL2/DERL3/ERLEC1/HM13/OS9/SEC61B/UBE2J1 | 8 |
| GO | B_3_1 | GO:0070085 | glycosylation | 10/47 | 242/18986 | 3.21911851509206e-10 | 1.30834173934813e-08 | 1.02140452132996e-08 | ALG5/B4GALT3/DAD1/DDOST/DERL3/MGAT1/RPN1/RPN2/ST6GALNAC4/UBE2J1 | 10 |