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Selected Module: B_3_1
Module Info
| Module_Name | B_3_1 |
| Cell_Type | B |
| Name | B_3_1: Protein processing in endoplasmic reticulum |
| Meta_Module | B_2 |
| Gene_Number | 47 |
Genes:
ALG5, ARF4, ARFGAP3, ATF4, B4GALT3, CD59, COPG1, DAD1, DDOST, DERL1, DERL2, DERL3, DNAJC1, ERGIC3, ERLEC1, FKBP2, HM13, IDH2, ISG20, ITM2C, KDELR1, KLF13, LRPAP1, MGAT1, MORF4L2, NUCB1, NUCB2, OS9, P4HB, RPN1, RPN2, SAR1B, SEC61A1, SEC61B, SRP54, SRPRA, SRPRB, SSR1, SSR2, ST6GALNAC4, TMBIM6, TMCO1, TMEM208, TNFRSF17, TXNDC15, UBE2J1, ZBP1
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| XBP1 | 0.00087721865727556 | ARFGAP3/KDELR1/MORF4L2/SEC61A1/SRPRA |
| HTF | 0.00088044164334352 | HM13/MORF4L2/SEC61A1/SRP54 |
| STAT1 | 0.0049985900069652 | DDOST/ITM2C/MORF4L2/NUCB1/TMCO1 |
| GABP | 0.0049985900069652 | DDOST/DERL1/SRP54/TMCO1/TMEM208 |
| NRF2 | 0.0049985900069652 | DDOST/DNAJC1/ITM2C/TMCO1/TMEM208 |
| FOXO4 | 0.0206509811700283 | COPG1/ERLEC1/FKBP2/SRP54/TMCO1 |
| FOXR2 | 0.0239983226037003 | HM13/P4HB/SRP54/SSR2 |
| GGAANCGGAANY | 0.0249993647968756 | SEC61A1/SRP54/TMCO1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| MeSH_gene2pubmed | B_3_1 | D015388 | Organelles | 5/47 | 432/26076 | 0.00105532772813897 | 0.0389008061025329 | 0.0349459153647328 | ARF4/CD59/COPG1/KDELR1/SAR1B | 5 |
| MeSH_gene2pubmed | B_3_1 | D001389 | Azirines | 2/47 | 27/26076 | 0.00108446491832601 | 0.0389008061025329 | 0.0349459153647328 | COPG1/HM13 | 2 |
| KEGG | B_3_1 | hsa05110 | Vibrio cholerae infection | 3/36 | 51/8541 | 0.00124649710423436 | 0.017450959459281 | 0.017057328794786 | KDELR1/SEC61A1/SEC61B | 3 |
| reactome | B_3_1 | R-HSA-5358351 | Signaling by Hedgehog | 4/36 | 149/11146 | 0.00129548748022239 | 0.00573004077790675 | 0.00356652423704951 | DERL2/ERLEC1/OS9/P4HB | 4 |
| MeSH_gene2pubmed | B_3_1 | D020756 | Coatomer Protein | 3/47 | 119/26076 | 0.00129795129897093 | 0.0451038076392399 | 0.0405182823264282 | ARFGAP3/COPG1/KDELR1 | 3 |
| GO | B_3_1 | GO:0098554 | cytoplasmic side of endoplasmic reticulum membrane | 2/47 | 23/19960 | 0.00133038785946131 | 0.0104104435360426 | 0.0070699107205722 | ALG5/HM13 | 2 |
| GO | B_3_1 | GO:0030662 | coated vesicle membrane | 4/47 | 205/19960 | 0.00136432871746778 | 0.0104104435360426 | 0.0070699107205722 | CD59/COPG1/KDELR1/SAR1B | 4 |
| GO | B_3_1 | GO:0030134 | COPII-coated ER to Golgi transport vesicle | 3/47 | 95/19960 | 0.00145522328998445 | 0.0104104435360426 | 0.0070699107205722 | CD59/ERGIC3/SAR1B | 3 |
| WikiPathways | B_3_1 | WP5304 | Cholesterol metabolism | 3/28 | 72/8836 | 0.00146842622776332 | 0.0297358425523641 | 0.0236495589890147 | LRPAP1/MGAT1/SAR1B | 3 |
| GO | B_3_1 | GO:0030137 | COPI-coated vesicle | 2/47 | 25/19960 | 0.00157281143793016 | 0.0104479616948218 | 0.00709538994554959 | COPG1/KDELR1 | 2 |