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Selected Module: B_3_1
Module Info
| Module_Name | B_3_1 |
| Cell_Type | B |
| Name | B_3_1: Protein processing in endoplasmic reticulum |
| Meta_Module | B_2 |
| Gene_Number | 47 |
Genes:
ALG5, ARF4, ARFGAP3, ATF4, B4GALT3, CD59, COPG1, DAD1, DDOST, DERL1, DERL2, DERL3, DNAJC1, ERGIC3, ERLEC1, FKBP2, HM13, IDH2, ISG20, ITM2C, KDELR1, KLF13, LRPAP1, MGAT1, MORF4L2, NUCB1, NUCB2, OS9, P4HB, RPN1, RPN2, SAR1B, SEC61A1, SEC61B, SRP54, SRPRA, SRPRB, SSR1, SSR2, ST6GALNAC4, TMBIM6, TMCO1, TMEM208, TNFRSF17, TXNDC15, UBE2J1, ZBP1
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| XBP1 | 0.00087721865727556 | ARFGAP3/KDELR1/MORF4L2/SEC61A1/SRPRA |
| HTF | 0.00088044164334352 | HM13/MORF4L2/SEC61A1/SRP54 |
| STAT1 | 0.0049985900069652 | DDOST/ITM2C/MORF4L2/NUCB1/TMCO1 |
| GABP | 0.0049985900069652 | DDOST/DERL1/SRP54/TMCO1/TMEM208 |
| NRF2 | 0.0049985900069652 | DDOST/DNAJC1/ITM2C/TMCO1/TMEM208 |
| FOXO4 | 0.0206509811700283 | COPG1/ERLEC1/FKBP2/SRP54/TMCO1 |
| FOXR2 | 0.0239983226037003 | HM13/P4HB/SRP54/SSR2 |
| GGAANCGGAANY | 0.0249993647968756 | SEC61A1/SRP54/TMCO1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| reactome | B_3_1 | R-HSA-5362768 | Hh mutants are degraded by ERAD | 3/36 | 56/11146 | 0.00076265019572427 | 0.00381325097862136 | 0.00237346514001147 | DERL2/ERLEC1/OS9 | 3 |
| GO | B_3_1 | GO:0030663 | COPI-coated vesicle membrane | 2/47 | 18/19960 | 0.00081060036411937 | 0.00843417001621507 | 0.00572778948469614 | COPG1/KDELR1 | 2 |
| GO | B_3_1 | GO:0071806 | protein transmembrane transport | 3/47 | 74/18986 | 0.00081482460012534 | 0.0100790260319852 | 0.00786855792340721 | SEC61A1/SEC61B/SRP54 | 3 |
| GO | B_3_1 | GO:0005788 | endoplasmic reticulum lumen | 5/47 | 314/19960 | 0.00083320920713714 | 0.00843417001621507 | 0.00572778948469614 | ERLEC1/LRPAP1/NUCB1/OS9/P4HB | 5 |
| reactome | B_3_1 | R-HSA-8856688 | Golgi-to-ER retrograde transport | 4/36 | 133/11146 | 0.00084894902966692 | 0.004067880767154 | 0.00253195324637503 | ARF4/ARFGAP3/COPG1/KDELR1 | 4 |
| MeSH_gene2pubmed | B_3_1 | D017360 | Arabidopsis | 5/47 | 413/26076 | 0.00086356989266472 | 0.0355662859497473 | 0.0319504026564845 | CD59/DAD1/KDELR1/SSR1/TMBIM6 | 5 |
| reactome | B_3_1 | R-HSA-5387390 | Hh mutants abrogate ligand secretion | 3/36 | 59/11146 | 0.00088848720112301 | 0.00408704112516585 | 0.00254387914426799 | DERL2/ERLEC1/OS9 | 3 |
| MeSH_gene2pubmed | B_3_1 | D012117 | Resins, Synthetic | 3/47 | 105/26076 | 0.00090439303444471 | 0.0359173233679474 | 0.0322657514920315 | SSR1/SSR2/TXNDC15 | 3 |
| GO | B_3_1 | GO:0030135 | coated vesicle | 5/47 | 320/19960 | 0.00090690000174355 | 0.00843417001621507 | 0.00572778948469614 | CD59/COPG1/ERGIC3/KDELR1/SAR1B | 5 |
| MeSH_gene2pubmed | B_3_1 | D000135 | Acid Phosphatase | 4/47 | 245/26076 | 0.00098775295723625 | 0.0378752168429902 | 0.0340245936993541 | DAD1/DDOST/RPN1/RPN2 | 4 |