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Selected Module: B_3_1
Module Info
| Module_Name | B_3_1 |
| Cell_Type | B |
| Name | B_3_1: Protein processing in endoplasmic reticulum |
| Meta_Module | B_2 |
| Gene_Number | 47 |
Genes:
ALG5, ARF4, ARFGAP3, ATF4, B4GALT3, CD59, COPG1, DAD1, DDOST, DERL1, DERL2, DERL3, DNAJC1, ERGIC3, ERLEC1, FKBP2, HM13, IDH2, ISG20, ITM2C, KDELR1, KLF13, LRPAP1, MGAT1, MORF4L2, NUCB1, NUCB2, OS9, P4HB, RPN1, RPN2, SAR1B, SEC61A1, SEC61B, SRP54, SRPRA, SRPRB, SSR1, SSR2, ST6GALNAC4, TMBIM6, TMCO1, TMEM208, TNFRSF17, TXNDC15, UBE2J1, ZBP1
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| XBP1 | 0.00087721865727556 | ARFGAP3/KDELR1/MORF4L2/SEC61A1/SRPRA |
| HTF | 0.00088044164334352 | HM13/MORF4L2/SEC61A1/SRP54 |
| STAT1 | 0.0049985900069652 | DDOST/ITM2C/MORF4L2/NUCB1/TMCO1 |
| GABP | 0.0049985900069652 | DDOST/DERL1/SRP54/TMCO1/TMEM208 |
| NRF2 | 0.0049985900069652 | DDOST/DNAJC1/ITM2C/TMCO1/TMEM208 |
| FOXO4 | 0.0206509811700283 | COPG1/ERLEC1/FKBP2/SRP54/TMCO1 |
| FOXR2 | 0.0239983226037003 | HM13/P4HB/SRP54/SSR2 |
| GGAANCGGAANY | 0.0249993647968756 | SEC61A1/SRP54/TMCO1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_3_1 | GO:0042277 | peptide binding | 5/47 | 249/18737 | 0.00038730319001334 | 0.00991496166434167 | 0.00725683871814481 | ITM2C/KDELR1/LRPAP1/SEC61A1/SRP54 | 5 |
| GO | B_3_1 | GO:1990253 | cellular response to leucine starvation | 2/47 | 12/18986 | 0.00038966550767132 | 0.00515627148523212 | 0.0040254307034834 | ATF4/SAR1B | 2 |
| reactome | B_3_1 | R-HSA-8963888 | Chylomicron assembly | 2/36 | 10/11146 | 0.00044907061605043 | 0.00258215604228997 | 0.00160720009954891 | P4HB/SAR1B | 2 |
| GO | B_3_1 | GO:0035437 | maintenance of protein localization in endoplasmic reticulum | 2/47 | 13/18986 | 0.00045978719762121 | 0.0059458844419652 | 0.00464187075110409 | KDELR1/OS9 | 2 |
| MeSH_gene2pubmed | B_3_1 | D020727 | ADP-Ribosylation Factors | 5/47 | 360/26076 | 0.00046485852512441 | 0.0201879523307206 | 0.0181355232505243 | ARF4/ARFGAP3/COPG1/KDELR1/SEC61B | 5 |
| MeSH_gene2pubmed | B_3_1 | D020673 | Protein Renaturation | 3/47 | 84/26076 | 0.00047202046816433 | 0.0201879523307206 | 0.0181355232505243 | P4HB/SEC61A1/SEC61B | 3 |
| MeSH_gene2pubmed | B_3_1 | D051702 | Activating Transcription Factor 6 | 3/47 | 84/26076 | 0.00047202046816433 | 0.0201879523307206 | 0.0181355232505243 | ATF4/NUCB1/SAR1B | 3 |
| reactome | B_3_1 | R-HSA-381038 | XBP1(S) activates chaperone genes | 3/36 | 50/11146 | 0.00054646151006503 | 0.00299252731702281 | 0.00186262569846729 | SRPRA/SRPRB/SSR1 | 3 |
| reactome | B_3_1 | R-HSA-381070 | IRE1alpha activates chaperones | 3/36 | 52/11146 | 0.00061343941854653 | 0.00320661514240236 | 0.00199587944790261 | SRPRA/SRPRB/SSR1 | 3 |
| GO | B_3_1 | GO:0006620 | post-translational protein targeting to endoplasmic reticulum membrane | 2/47 | 15/18986 | 0.0006169932104166 | 0.00780153637171217 | 0.00609055286072063 | SEC61A1/SEC61B | 2 |