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Selected Module: B_3_1
Module Info
| Module_Name | B_3_1 |
| Cell_Type | B |
| Name | B_3_1: Protein processing in endoplasmic reticulum |
| Meta_Module | B_2 |
| Gene_Number | 47 |
Genes:
ALG5, ARF4, ARFGAP3, ATF4, B4GALT3, CD59, COPG1, DAD1, DDOST, DERL1, DERL2, DERL3, DNAJC1, ERGIC3, ERLEC1, FKBP2, HM13, IDH2, ISG20, ITM2C, KDELR1, KLF13, LRPAP1, MGAT1, MORF4L2, NUCB1, NUCB2, OS9, P4HB, RPN1, RPN2, SAR1B, SEC61A1, SEC61B, SRP54, SRPRA, SRPRB, SSR1, SSR2, ST6GALNAC4, TMBIM6, TMCO1, TMEM208, TNFRSF17, TXNDC15, UBE2J1, ZBP1
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| XBP1 | 0.00087721865727556 | ARFGAP3/KDELR1/MORF4L2/SEC61A1/SRPRA |
| HTF | 0.00088044164334352 | HM13/MORF4L2/SEC61A1/SRP54 |
| STAT1 | 0.0049985900069652 | DDOST/ITM2C/MORF4L2/NUCB1/TMCO1 |
| GABP | 0.0049985900069652 | DDOST/DERL1/SRP54/TMCO1/TMEM208 |
| NRF2 | 0.0049985900069652 | DDOST/DNAJC1/ITM2C/TMCO1/TMEM208 |
| FOXO4 | 0.0206509811700283 | COPG1/ERLEC1/FKBP2/SRP54/TMCO1 |
| FOXR2 | 0.0239983226037003 | HM13/P4HB/SRP54/SSR2 |
| GGAANCGGAANY | 0.0249993647968756 | SEC61A1/SRP54/TMCO1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_3_1 | GO:1903828 | negative regulation of protein localization | 5/47 | 223/18986 | 0.00021939734242825 | 0.00304480702052866 | 0.00237703924273997 | DERL2/DERL3/ERLEC1/OS9/UBE2J1 | 5 |
| reactome | B_3_1 | R-HSA-5619115 | Disorders of transmembrane transporters | 5/36 | 176/11146 | 0.00023511746964764 | 0.00151232537678277 | 0.00094131007433618 | DERL1/DERL2/DERL3/ERLEC1/OS9 | 5 |
| GO | B_3_1 | GO:0005048 | signal sequence binding | 3/47 | 48/18737 | 0.0002363659972853 | 0.00756371191312985 | 0.00553594046273484 | KDELR1/SEC61A1/SRP54 | 3 |
| reactome | B_3_1 | R-HSA-381119 | Unfolded Protein Response (UPR) | 4/36 | 95/11146 | 0.00023671179810513 | 0.00151232537678277 | 0.00094131007433618 | ATF4/SRPRA/SRPRB/SSR1 | 4 |
| MeSH_gene2pubmed | B_3_1 | D002966 | D002966 | 6/47 | 494/26076 | 0.00024928013477854 | 0.0138599754936872 | 0.0124508867318337 | ARF4/ARFGAP3/CD59/COPG1/FKBP2/SAR1B | 6 |
| reactome | B_3_1 | R-HSA-6811434 | COPI-dependent Golgi-to-ER retrograde traffic | 4/36 | 99/11146 | 0.00027734162696345 | 0.00167864668951567 | 0.0010448327220784 | ARF4/ARFGAP3/COPG1/KDELR1 | 4 |
| GO | B_3_1 | GO:0006890 | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | 3/47 | 52/18986 | 0.00028858207149812 | 0.00390959996862938 | 0.00305217128251152 | ARF4/ERGIC3/KDELR1 | 3 |
| MeSH_gene2pubmed | B_3_1 | D012276 | Ricin | 3/47 | 72/26076 | 0.00029995193666236 | 0.0158831692175502 | 0.0142683903705557 | DERL1/DERL2/SEC61A1 | 3 |
| MeSH_gene2pubmed | B_3_1 | D037241 | Mannose-Binding Lectins | 4/47 | 181/26076 | 0.00031724657880214 | 0.0160353725285446 | 0.0144051197743173 | DERL1/ERGIC3/KDELR1/SAR1B | 4 |
| MeSH_gene2pubmed | B_3_1 | D004229 | Dithiothreitol | 5/47 | 335/26076 | 0.00033471026170957 | 0.0161825135226544 | 0.0145373015268828 | ATF4/P4HB/SAR1B/SEC61A1/SEC61B | 5 |