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Selected Module: B_1_2
Module Info
| Module_Name | B_1_2 |
| Cell_Type | B |
| Name | B_1_2: endoplasmic reticulum protein-containing complex |
| Meta_Module | B_2 |
| Gene_Number | 27 |
Genes:
CRELD2, DNAJB11, DNAJC3, EDEM2, FKBP11, HDLBP, HSP90B1, HSPA5, LMAN1, LMAN2, MYDGF, MZB1, PDIA4, PDIA6, PPIB, PRDX4, RABAC1, SEC11C, SELENOK, SELENOS, SPCS1, SPCS2, SPCS3, SSR3, TMED10, TMED9, TRAM1
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| USF | 0.00826796953778515 | FKBP11/PRDX4/SEC11C/TMED10 |
| PGM3 | 0.00826796953778515 | HDLBP/MYDGF/PPIB/RABAC1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_1_2 | GO:0036503 | ERAD pathway | 4/25 | 113/18986 | 1.366394268001e-05 | 0.00039710833413779 | 0.00028676300756073 | EDEM2/HSP90B1/HSPA5/SELENOS | 4 |
| MeSH_gene2pubmed | B_1_2 | D007887 | Fabaceae | 3/27 | 46/26076 | 1.45875812002519e-05 | 0.00070141952937877 | 0.00052592069064066 | LMAN1/LMAN2/PPIB | 3 |
| MeSH_gene2pubmed | B_1_2 | D000515 | alpha 1-Antitrypsin | 5/27 | 313/26076 | 1.56856238645695e-05 | 0.00072404839758852 | 0.00054288769754425 | EDEM2/HSP90B1/LMAN1/LMAN2/TMED9 | 5 |
| reactome | B_1_2 | R-HSA-2980736 | Peptide hormone metabolism | 4/21 | 88/11146 | 1.95948635828405e-05 | 0.00011756918149704 | 7.3910450356328e-05 | SEC11C/SPCS1/SPCS2/SPCS3 | 4 |
| MeSH_gene2pubmed | B_1_2 | D006026 | Glycoside Hydrolases | 5/27 | 338/26076 | 2.26846578687726e-05 | 0.00100684981463706 | 0.00075493071935753 | DNAJB11/HSP90B1/HSPA5/LMAN1/PPIB | 5 |
| MeSH_gene2pubmed | B_1_2 | D021983 | Cyclophilins | 4/27 | 164/26076 | 2.36439546532336e-05 | 0.00101056013591969 | 0.00075771269882877 | HSP90B1/HSPA5/PDIA4/PPIB | 4 |
| GO | B_1_2 | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | 4/25 | 132/18986 | 2.52133441756966e-05 | 0.00068965912009993 | 0.00049802209238682 | LMAN1/LMAN2/TMED10/TMED9 | 4 |
| GO | B_1_2 | GO:1905368 | peptidase complex | 4/27 | 129/19960 | 2.60407652318771e-05 | 0.00012419441879818 | 4.4279843714123e-05 | SEC11C/SPCS1/SPCS2/SPCS3 | 4 |
| reactome | B_1_2 | R-HSA-5694530 | Cargo concentration in the ER | 3/21 | 33/11146 | 3.03280793049735e-05 | 0.000167970900766 | 0.00010559574170962 | LMAN1/LMAN2/TMED10 | 3 |
| GO | B_1_2 | GO:0032527 | protein exit from endoplasmic reticulum | 3/25 | 47/18986 | 3.14740985833966e-05 | 0.00081308088007107 | 0.00058714838877798 | EDEM2/HSP90B1/SELENOS | 3 |