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Selected Module: B_1_1


Module Info

Module_Name B_1_1
Cell_Type B
Name B_1_1: RNA, Nuclear
Meta_Module B_1
Gene_Number 33

Genes:

EEF1A1, EEF1B2, NACA, RPL10, RPL11, RPL12, RPL13, RPL14, RPL18, RPL19, RPL24, RPL29, RPL3, RPL30, RPL32, RPL5, RPL7A, RPL8, RPLP1, RPS12, RPS13, RPS14, RPS15, RPS15A, RPS19, RPS23, RPS27A, RPS3, RPS4X, RPS5, RPS7, RPS8, RPS9


UMAP Visualizations


UMAP for B_1_1

UMAP for B_1_1


Word Cloud

Enriched TF

Wordcloud for B_1_1
TF p.adjust Genes
ZZZ3 7.91479601155885e-19 EEF1A1/NACA/RPL11/RPL24/RPL29/RPL3/RPL32/RPL5/RPL8/RPS14/RPS15A/RPS23/RPS3/RPS4X/RPS7
RUVBL1 1.37266720166462e-07 EEF1A1/NACA/RPL11/RPL18/RPL24/RPS12/RPS14
PSMB5 1.37266720166462e-07 EEF1A1/RPL10/RPL12/RPL3/RPL32/RPLP1/RPS12/RPS9
NPM1 8.44610226544066e-06 RPL10/RPL12/RPL18/RPL7A/RPS19/RPS7/RPS8
GTF2E2 1.69180553701949e-05 EEF1A1/RPL10/RPL12/RPLP1/RPS12/RPS8/RPS9
HJURP 2.71150205332253e-05 EEF1A1/RPL3/RPL7A/RPS15A
FOXR2 0.00017734117507332 EEF1A1/RPL32/RPL8/RPS14/RPS5
PER1 0.00017734117507332 EEF1A1/RPL12/RPL3


Functional Enrichment Results

enrichment_term
module ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
reactome B_1_1 R-HSA-72649 Translation initiation complex formation 14/32 59/11146 1.12706270897689e-24 1.41428191545809e-23 1.18638179892304e-23 RPS12/RPS13/RPS14/RPS15/RPS15A/RPS19/RPS23/RPS27A/RPS3/RPS4X/RPS5/RPS7/RPS8/RPS9 14
reactome B_1_1 R-HSA-72702 Ribosomal scanning and start codon recognition 14/32 59/11146 1.12706270897689e-24 1.41428191545809e-23 1.18638179892304e-23 RPS12/RPS13/RPS14/RPS15/RPS15A/RPS19/RPS23/RPS27A/RPS3/RPS4X/RPS5/RPS7/RPS8/RPS9 14
reactome B_1_1 R-HSA-72662 Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S 14/32 60/11146 1.46785544568845e-24 1.78436177616502e-23 1.49682627685336e-23 RPS12/RPS13/RPS14/RPS15/RPS15A/RPS19/RPS23/RPS27A/RPS3/RPS4X/RPS5/RPS7/RPS8/RPS9 14
MeSH_gene2pubmed B_1_1 D020071 Interspersed Repetitive Sequences 13/33 89/26076 1.84994824260173e-24 1.36711175128268e-22 1.012603248582e-22 RPL14/RPL18/RPL24/RPL30/RPL32/RPL5/RPL8/RPLP1/RPS12/RPS27A/RPS3/RPS5/RPS9 13
GO B_1_1 GO:0042254 ribosome biogenesis 18/33 317/18986 5.18808435584578e-24 9.00132635739242e-22 7.07217814823188e-22 RPL11/RPL14/RPL24/RPL5/RPL7A/RPS12/RPS13/RPS14/RPS15/RPS15A/RPS19/RPS23/RPS27A/RPS4X/RPS5/RPS7/RPS8/RPS9 18
GO B_1_1 GO:0005925 focal adhesion 19/33 424/19960 6.88005576981194e-24 3.78403067339657e-23 2.17264919046693e-23 RPL12/RPL18/RPL19/RPL3/RPL30/RPL5/RPL7A/RPL8/RPLP1/RPS13/RPS14/RPS15/RPS19/RPS3/RPS4X/RPS5/RPS7/RPS8/RPS9 19
GO B_1_1 GO:0030055 cell-substrate junction 19/33 434/19960 1.07435537295065e-23 5.2524040455365e-23 3.01573438021235e-23 RPL12/RPL18/RPL19/RPL3/RPL30/RPL5/RPL7A/RPL8/RPLP1/RPS13/RPS14/RPS15/RPS19/RPS3/RPS4X/RPS5/RPS7/RPS8/RPS9 19
reactome B_1_1 R-HSA-9692914 SARS-CoV-1-host interactions 15/32 96/11146 1.70806724422385e-23 2.01344896364569e-22 1.68899791294862e-22 EEF1A1/RPS12/RPS13/RPS14/RPS15/RPS15A/RPS19/RPS23/RPS27A/RPS3/RPS4X/RPS5/RPS7/RPS8/RPS9 15
GO B_1_1 GO:0032040 small-subunit processome 12/33 74/19960 8.80963003919708e-22 3.87623721724671e-21 2.22559074674453e-21 RPS12/RPS13/RPS14/RPS15A/RPS19/RPS23/RPS27A/RPS4X/RPS5/RPS7/RPS8/RPS9 12
GO B_1_1 GO:0042274 ribosomal small subunit biogenesis 13/33 108/18986 1.61413779134878e-21 1.86701937866008e-19 1.46688311564678e-19 RPS12/RPS13/RPS14/RPS15/RPS15A/RPS19/RPS23/RPS27A/RPS4X/RPS5/RPS7/RPS8/RPS9 13