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Selected Module: B_14_24
Module Info
| Module_Name | B_14_24 |
| Cell_Type | B |
| Name | B_14_24: DNA-templated DNA replication |
| Meta_Module | B_9 |
| Gene_Number | 31 |
Genes:
ATAD5, CENPK, CHAF1A, CKAP5, CSE1L, DDX11, DHFR, FEN1, FN3KRP, GMNN, H2AC20, HELLS, LMNB1, MAD2L1, MIS18A, MMS22L, ORC6, PHF19, POLD3, PRIM1, RFC3, RFC4, RRM1, SAAL1, SKP2, TEX30, TOPBP1, TTF2, UBE2T, UNG, YEATS4
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| SGCGSSAAA | 8.60315355022546e-05 | ATAD5/GMNN/POLD3/TOPBP1/UNG |
| KTGGYRSGAA | 8.60315355022546e-05 | MMS22L/PRIM1/RFC4/TOPBP1 |
| E2F1DP1RB | 8.60315355022546e-05 | ATAD5/GMNN/POLD3/TOPBP1/UNG |
| E2F | 8.60315355022546e-05 | ATAD5/GMNN/POLD3/TOPBP1/UNG |
| E2F1 | 8.60315355022546e-05 | ATAD5/GMNN/POLD3/TOPBP1/UNG |
| E2F | 8.60315355022546e-05 | ATAD5/GMNN/POLD3/TOPBP1/UNG |
| E2F | 8.60315355022546e-05 | ATAD5/GMNN/POLD3/TOPBP1/UNG |
| E2F1DP1 | 8.60315355022546e-05 | ATAD5/GMNN/POLD3/TOPBP1/UNG |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_14_24 | GO:0008094 | ATP-dependent activity, acting on DNA | 6/30 | 123/18737 | 3.69417694700756e-08 | 1.9025011277089e-06 | 1.26379737660785e-06 | ATAD5/DDX11/HELLS/RFC3/RFC4/TTF2 | 6 |
| MeSH_gene2pubmed | B_14_24 | D018741 | Replication Origin | 6/31 | 165/26076 | 3.78415391217165e-08 | 4.99508316406657e-06 | 3.24180958629765e-06 | CHAF1A/DHFR/GMNN/ORC6/PRIM1/YEATS4 | 6 |
| KEGG | B_14_24 | hsa03410 | Base excision repair | 5/20 | 44/8541 | 4.2031440098934e-08 | 8.19613081929212e-07 | 6.85776127929975e-07 | FEN1/POLD3/RFC3/RFC4/UNG | 5 |
| reactome | B_14_24 | R-HSA-180786 | Extension of Telomeres | 5/24 | 51/11146 | 6.52927245457984e-08 | 1.28953130977952e-06 | 7.04474133257299e-07 | FEN1/POLD3/PRIM1/RFC3/RFC4 | 5 |
| GO | B_14_24 | GO:0005657 | replication fork | 5/30 | 75/19960 | 8.66333964037538e-08 | 5.45790397343649e-06 | 3.00937061191987e-06 | MMS22L/POLD3/PRIM1/RFC3/RFC4 | 5 |
| MeSH_gene2pubmed | B_14_24 | D013698 | Templates, Genetic | 8/31 | 500/26076 | 9.25137534105033e-08 | 1.13395429180303e-05 | 7.3593647449859e-06 | CHAF1A/DHFR/FEN1/PRIM1/RFC3/RFC4/TTF2/UNG | 8 |
| reactome | B_14_24 | R-HSA-5651801 | PCNA-Dependent Long Patch Base Excision Repair | 4/24 | 21/11146 | 9.65588175964369e-08 | 1.76034152079658e-06 | 9.61678912094068e-07 | FEN1/POLD3/RFC3/RFC4 | 4 |
| reactome | B_14_24 | R-HSA-157579 | Telomere Maintenance | 6/24 | 112/11146 | 1.04496811811029e-07 | 1.76898174280099e-06 | 9.66399086673426e-07 | FEN1/H2AC20/POLD3/PRIM1/RFC3/RFC4 | 6 |
| reactome | B_14_24 | R-HSA-110373 | Resolution of AP sites via the multiple-nucleotide patch replacement pathway | 4/24 | 26/11146 | 2.39468072926049e-07 | 3.5471208302171e-06 | 1.93780085328316e-06 | FEN1/POLD3/RFC3/RFC4 | 4 |
| reactome | B_14_24 | R-HSA-174411 | Polymerase switching on the C-strand of the telomere | 4/24 | 26/11146 | 2.39468072926049e-07 | 3.5471208302171e-06 | 1.93780085328316e-06 | POLD3/PRIM1/RFC3/RFC4 | 4 |