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Selected Module: B_14_24
Module Info
| Module_Name | B_14_24 |
| Cell_Type | B |
| Name | B_14_24: DNA-templated DNA replication |
| Meta_Module | B_9 |
| Gene_Number | 31 |
Genes:
ATAD5, CENPK, CHAF1A, CKAP5, CSE1L, DDX11, DHFR, FEN1, FN3KRP, GMNN, H2AC20, HELLS, LMNB1, MAD2L1, MIS18A, MMS22L, ORC6, PHF19, POLD3, PRIM1, RFC3, RFC4, RRM1, SAAL1, SKP2, TEX30, TOPBP1, TTF2, UBE2T, UNG, YEATS4
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| SGCGSSAAA | 8.60315355022546e-05 | ATAD5/GMNN/POLD3/TOPBP1/UNG |
| KTGGYRSGAA | 8.60315355022546e-05 | MMS22L/PRIM1/RFC4/TOPBP1 |
| E2F1DP1RB | 8.60315355022546e-05 | ATAD5/GMNN/POLD3/TOPBP1/UNG |
| E2F | 8.60315355022546e-05 | ATAD5/GMNN/POLD3/TOPBP1/UNG |
| E2F1 | 8.60315355022546e-05 | ATAD5/GMNN/POLD3/TOPBP1/UNG |
| E2F | 8.60315355022546e-05 | ATAD5/GMNN/POLD3/TOPBP1/UNG |
| E2F | 8.60315355022546e-05 | ATAD5/GMNN/POLD3/TOPBP1/UNG |
| E2F1DP1 | 8.60315355022546e-05 | ATAD5/GMNN/POLD3/TOPBP1/UNG |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| reactome | B_14_24 | R-HSA-5696399 | Global Genome Nucleotide Excision Repair (GG-NER) | 3/24 | 84/11146 | 0.00074547357058878 | 0.00321231338599167 | 0.00175489472119465 | POLD3/RFC3/RFC4 | 3 |
| GO | B_14_24 | GO:0044772 | mitotic cell cycle phase transition | 5/30 | 467/18986 | 0.00075542065244538 | 0.0117090201129035 | 0.00760390525158842 | ATAD5/MAD2L1/RRM1/SKP2/TOPBP1 | 5 |
| MeSH_gene2pubmed | B_14_24 | D012318 | RNA Polymerase I | 3/31 | 151/26076 | 0.00075964663349656 | 0.0169292678322091 | 0.0109870969000596 | DHFR/LMNB1/TTF2 | 3 |
| WikiPathways | B_14_24 | WP5114 | Nucleotide excision repair in xeroderma pigmentosum | 3/22 | 75/8836 | 0.00080549783533761 | 0.0043295508649397 | 0.00201374458834405 | POLD3/RFC3/RFC4 | 3 |
| GO | B_14_24 | GO:0005635 | nuclear envelope | 5/30 | 498/19960 | 0.00080606014607745 | 0.00431303387490887 | 0.00237811391598985 | CSE1L/LMNB1/MAD2L1/RRM1/YEATS4 | 5 |
| GO | B_14_24 | GO:0000793 | condensed chromosome | 4/30 | 284/19960 | 0.0008215302618874 | 0.00431303387490887 | 0.00237811391598985 | CENPK/CKAP5/MAD2L1/TOPBP1 | 4 |
| MeSH_gene2pubmed | B_14_24 | D043223 | Deoxyribonuclease IV (Phage T4-Induced) | 2/31 | 36/26076 | 0.00084026654344218 | 0.0184858639557282 | 0.0119973279751935 | FEN1/UNG | 2 |
| GO | B_14_24 | GO:1902749 | regulation of cell cycle G2/M phase transition | 3/30 | 120/18986 | 0.00088260530132962 | 0.0132658251351361 | 0.00861490341967668 | ATAD5/RRM1/TOPBP1 | 3 |
| MeSH_gene2pubmed | B_14_24 | D009699 | N-Glycosyl Hydrolases | 3/31 | 160/26076 | 0.00089824239132809 | 0.0192912313424884 | 0.0125200115080068 | DHFR/FEN1/UNG | 3 |
| MeSH_gene2pubmed | B_14_24 | D000494 | Allosteric Regulation | 4/31 | 367/26076 | 0.00089935810454491 | 0.0192912313424884 | 0.0125200115080068 | DHFR/MAD2L1/RRM1/SKP2 | 4 |