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Selected Module: B_14_24
Module Info
| Module_Name | B_14_24 |
| Cell_Type | B |
| Name | B_14_24: DNA-templated DNA replication |
| Meta_Module | B_9 |
| Gene_Number | 31 |
Genes:
ATAD5, CENPK, CHAF1A, CKAP5, CSE1L, DDX11, DHFR, FEN1, FN3KRP, GMNN, H2AC20, HELLS, LMNB1, MAD2L1, MIS18A, MMS22L, ORC6, PHF19, POLD3, PRIM1, RFC3, RFC4, RRM1, SAAL1, SKP2, TEX30, TOPBP1, TTF2, UBE2T, UNG, YEATS4
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| SGCGSSAAA | 8.60315355022546e-05 | ATAD5/GMNN/POLD3/TOPBP1/UNG |
| KTGGYRSGAA | 8.60315355022546e-05 | MMS22L/PRIM1/RFC4/TOPBP1 |
| E2F1DP1RB | 8.60315355022546e-05 | ATAD5/GMNN/POLD3/TOPBP1/UNG |
| E2F | 8.60315355022546e-05 | ATAD5/GMNN/POLD3/TOPBP1/UNG |
| E2F1 | 8.60315355022546e-05 | ATAD5/GMNN/POLD3/TOPBP1/UNG |
| E2F | 8.60315355022546e-05 | ATAD5/GMNN/POLD3/TOPBP1/UNG |
| E2F | 8.60315355022546e-05 | ATAD5/GMNN/POLD3/TOPBP1/UNG |
| E2F1DP1 | 8.60315355022546e-05 | ATAD5/GMNN/POLD3/TOPBP1/UNG |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| reactome | B_14_24 | R-HSA-5693567 | HDR through Homologous Recombination (HRR) or Single Strand Annealing (SSA) | 4/24 | 134/11146 | 0.00017608623658214 | 0.00101786434316995 | 0.00055606179973308 | POLD3/RFC3/RFC4/TOPBP1 | 4 |
| MeSH_gene2pubmed | B_14_24 | D004250 | DNA Topoisomerases, Type II | 4/31 | 240/26076 | 0.00018112705141092 | 0.00535046972254574 | 0.00347245550635099 | DHFR/MAD2L1/ORC6/TOPBP1 | 4 |
| MeSH_gene2pubmed | B_14_24 | D011071 | Poly T | 2/31 | 17/26076 | 0.00018396137157937 | 0.00535046972254574 | 0.00347245550635099 | PRIM1/UNG | 2 |
| MeSH_gene2pubmed | B_14_24 | D010944 | Plants | 4/31 | 251/26076 | 0.00021496006337447 | 0.00614785781251 | 0.00398996047456482 | CHAF1A/DHFR/MIS18A/RRM1 | 4 |
| MeSH_gene2pubmed | B_14_24 | D034961 | Antigens, Nuclear | 5/31 | 472/26076 | 0.00021913873938187 | 0.00616462420949667 | 0.00400084186826615 | CHAF1A/FEN1/ORC6/PRIM1/YEATS4 | 5 |
| MeSH_gene2pubmed | B_14_24 | D014983 | Xeroderma Pigmentosum | 3/31 | 101/26076 | 0.00023429277478889 | 0.00648461937964114 | 0.00420851877294831 | DHFR/H2AC20/UNG | 3 |
| GO | B_14_24 | GO:0032508 | DNA duplex unwinding | 3/30 | 77/18986 | 0.00024065560201834 | 0.00486261668298693 | 0.00315781134336588 | DDX11/RFC3/RFC4 | 3 |
| GO | B_14_24 | GO:0045911 | positive regulation of DNA recombination | 3/30 | 77/18986 | 0.00024065560201834 | 0.00486261668298693 | 0.00315781134336588 | ATAD5/SKP2/YEATS4 | 3 |
| GO | B_14_24 | GO:0045787 | positive regulation of cell cycle | 5/30 | 365/18986 | 0.0002450915666828 | 0.00486261668298693 | 0.00315781134336588 | ATAD5/DDX11/FEN1/MAD2L1/RRM1 | 5 |
| MeSH_gene2pubmed | B_14_24 | D045325 | HCT116 Cells | 5/31 | 486/26076 | 0.00025083253665846 | 0.00681269117880016 | 0.00442143741085178 | CSE1L/FEN1/GMNN/MAD2L1/SKP2 | 5 |