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Selected Module: B_14_22
Module Info
| Module_Name | B_14_22 |
| Cell_Type | B |
| Name | B_14_22: Processing of Capped Intron-Containing Pre-mRNA |
| Meta_Module | B_3 |
| Gene_Number | 44 |
Genes:
AAMP, ADPRS, ARPC1A, BAX, CDK9, CISD3, CZIB, DTD1, ECHDC1, EED, ELP5, EMG1, ERI3, GLRX2, GPN1, GTF2E2, GTF2H5, HAUS1, HTATSF1, ITGB3BP, MAP7D1, MPHOSPH6, NPRL2, PCBP1, PIN4, PLRG1, PRKD2, PRPF19, PSMG2, RAB11B, RAE1, RALA, RBFA, SF3B4, SIT1, SNRNP70, SRRT, SURF2, SZRD1, TAF10, TMSB10, TRAF7, USP39, ZCCHC17
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| GABP | 0.00099194550588209 | CDK9/EMG1/PCBP1/RAB11B/SF3B4/TAF10 |
| MCM2 | 0.0499319310762962 | AAMP/NPRL2/RALA |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_14_22 | GO:0000375 | RNA splicing, via transesterification reactions | 6/42 | 342/18986 | 9.92454297924768e-05 | 0.00823737067277558 | 0.00723156757435241 | HTATSF1/PLRG1/PRPF19/SF3B4/SNRNP70/USP39 | 6 |
| GO | B_14_22 | GO:0120114 | Sm-like protein family complex | 4/41 | 119/19960 | 0.00010256450786355 | 0.00229348538179775 | 0.00152773286123041 | HTATSF1/SF3B4/SNRNP70/USP39 | 4 |
| GO | B_14_22 | GO:0005669 | transcription factor TFIID complex | 3/41 | 45/19960 | 0.00010750712727177 | 0.00229348538179775 | 0.00152773286123041 | GTF2E2/GTF2H5/TAF10 | 3 |
| MeSH_gene2pubmed | B_14_22 | D051758 | Transcription Factor TFIIH | 4/44 | 153/26076 | 0.00012886340316372 | 0.0314515479696355 | 0.0271170398067479 | CDK9/GTF2E2/GTF2H5/TAF10 | 4 |
| MeSH_gene2pubmed | B_14_22 | D016325 | HIV Long Terminal Repeat | 6/44 | 474/26076 | 0.00013739300168752 | 0.0314515479696355 | 0.0271170398067479 | BAX/CDK9/GTF2E2/HTATSF1/SNRNP70/TAF10 | 6 |
| GO | B_14_22 | GO:0090734 | site of DNA damage | 4/41 | 131/19960 | 0.00014866997239096 | 0.00271853663800617 | 0.0018108673328824 | ADPRS/ARPC1A/HTATSF1/PRPF19 | 4 |
| MeSH_gene2pubmed | B_14_22 | D026601 | Protein D-Aspartate-L-Isoaspartate Methyltransferase | 2/44 | 11/26076 | 0.00015157259447456 | 0.0320284551555109 | 0.0276144402888891 | BAX/EED | 2 |
| MeSH_gene2pubmed | B_14_22 | D017412 | Ribonucleoprotein, U1 Small Nuclear | 4/44 | 166/26076 | 0.00017629437226044 | 0.0345914743285324 | 0.0298242359087226 | BAX/PCBP1/SF3B4/SNRNP70 | 4 |
| KEGG | B_14_22 | hsa03022 | Basal transcription factors | 3/22 | 44/8541 | 0.00018347858900138 | 0.00697218638205266 | 0.00675973748952474 | GTF2E2/GTF2H5/TAF10 | 3 |
| reactome | B_14_22 | R-HSA-167161 | HIV Transcription Initiation | 3/28 | 47/11146 | 0.00021380582545113 | 0.00361825243071151 | 0.00309888605309742 | GTF2E2/GTF2H5/TAF10 | 3 |