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Selected Module: B_14_22
Module Info
| Module_Name | B_14_22 |
| Cell_Type | B |
| Name | B_14_22: Processing of Capped Intron-Containing Pre-mRNA |
| Meta_Module | B_3 |
| Gene_Number | 44 |
Genes:
AAMP, ADPRS, ARPC1A, BAX, CDK9, CISD3, CZIB, DTD1, ECHDC1, EED, ELP5, EMG1, ERI3, GLRX2, GPN1, GTF2E2, GTF2H5, HAUS1, HTATSF1, ITGB3BP, MAP7D1, MPHOSPH6, NPRL2, PCBP1, PIN4, PLRG1, PRKD2, PRPF19, PSMG2, RAB11B, RAE1, RALA, RBFA, SF3B4, SIT1, SNRNP70, SRRT, SURF2, SZRD1, TAF10, TMSB10, TRAF7, USP39, ZCCHC17
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| GABP | 0.00099194550588209 | CDK9/EMG1/PCBP1/RAB11B/SF3B4/TAF10 |
| MCM2 | 0.0499319310762962 | AAMP/NPRL2/RALA |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| MeSH_gene2pubmed | B_14_22 | D005804 | Genes, Lethal | 6/44 | 364/26076 | 3.2031303816747e-05 | 0.00977666573162268 | 0.00842929047809133 | BAX/CDK9/EED/GTF2E2/RAE1/SF3B4 | 6 |
| MeSH_gene2pubmed | B_14_22 | D034802 | RNA-Binding Protein EWS | 4/44 | 116/26076 | 4.39893282146882e-05 | 0.0120838684605748 | 0.0104185251034788 | CDK9/GTF2E2/HTATSF1/TAF10 | 4 |
| GO | B_14_22 | GO:0097525 | spliceosomal snRNP complex | 4/41 | 97/19960 | 4.62348207527292e-05 | 0.00197268568544978 | 0.00131404227402494 | HTATSF1/SF3B4/SNRNP70/USP39 | 4 |
| reactome | B_14_22 | R-HSA-674695 | RNA Polymerase II Pre-transcription Events | 4/28 | 81/11146 | 4.64087010664748e-05 | 0.00145855917637492 | 0.00124919661517278 | CDK9/GTF2E2/GTF2H5/TAF10 | 4 |
| GO | B_14_22 | GO:0000245 | spliceosomal complex assembly | 4/42 | 96/18986 | 5.92905357473096e-05 | 0.00823737067277558 | 0.00723156757435241 | HTATSF1/PRPF19/SF3B4/USP39 | 4 |
| GO | B_14_22 | GO:0042254 | ribosome biogenesis | 6/42 | 317/18986 | 6.53298544634581e-05 | 0.00823737067277558 | 0.00723156757435241 | EMG1/ERI3/GTF2H5/MPHOSPH6/PIN4/RBFA | 6 |
| GO | B_14_22 | GO:0030532 | small nuclear ribonucleoprotein complex | 4/41 | 107/19960 | 6.78506638988758e-05 | 0.00217122124476403 | 0.00144629046731814 | HTATSF1/SF3B4/SNRNP70/USP39 | 4 |
| GO | B_14_22 | GO:0008380 | RNA splicing | 7/42 | 484/18986 | 8.3433904125262e-05 | 0.00823737067277558 | 0.00723156757435241 | HTATSF1/PLRG1/PRPF19/SF3B4/SNRNP70/TAF10/USP39 | 7 |
| GO | B_14_22 | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | 6/42 | 338/18986 | 9.30383144176788e-05 | 0.00823737067277558 | 0.00723156757435241 | HTATSF1/PLRG1/PRPF19/SF3B4/SNRNP70/USP39 | 6 |
| GO | B_14_22 | GO:0000398 | mRNA splicing, via spliceosome | 6/42 | 338/18986 | 9.30383144176788e-05 | 0.00823737067277558 | 0.00723156757435241 | HTATSF1/PLRG1/PRPF19/SF3B4/SNRNP70/USP39 | 6 |