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Selected Module: B_14_22
Module Info
| Module_Name | B_14_22 |
| Cell_Type | B |
| Name | B_14_22: Processing of Capped Intron-Containing Pre-mRNA |
| Meta_Module | B_3 |
| Gene_Number | 44 |
Genes:
AAMP, ADPRS, ARPC1A, BAX, CDK9, CISD3, CZIB, DTD1, ECHDC1, EED, ELP5, EMG1, ERI3, GLRX2, GPN1, GTF2E2, GTF2H5, HAUS1, HTATSF1, ITGB3BP, MAP7D1, MPHOSPH6, NPRL2, PCBP1, PIN4, PLRG1, PRKD2, PRPF19, PSMG2, RAB11B, RAE1, RALA, RBFA, SF3B4, SIT1, SNRNP70, SRRT, SURF2, SZRD1, TAF10, TMSB10, TRAF7, USP39, ZCCHC17
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| GABP | 0.00099194550588209 | CDK9/EMG1/PCBP1/RAB11B/SF3B4/TAF10 |
| MCM2 | 0.0499319310762962 | AAMP/NPRL2/RALA |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_14_22 | GO:0006364 | rRNA processing | 6/42 | 225/18986 | 9.51732869123096e-06 | 0.00355472226617476 | 0.00312068198665099 | EMG1/ERI3/GTF2H5/MPHOSPH6/PIN4/RBFA | 6 |
| KEGG | B_14_22 | hsa03040 | Spliceosome | 6/22 | 217/8541 | 1.33224652812096e-05 | 0.00101250736137193 | 0.00098165533651018 | PCBP1/PLRG1/PRPF19/SF3B4/SNRNP70/USP39 | 6 |
| MeSH_gene2pubmed | B_14_22 | D019473 | Transcription Factors, TFII | 6/44 | 320/26076 | 1.55351740839739e-05 | 0.00660886820236033 | 0.0056980642826857 | CDK9/EED/GTF2E2/GTF2H5/HTATSF1/TAF10 | 6 |
| MeSH_gene2pubmed | B_14_22 | D017411 | Ribonucleoproteins, Small Nuclear | 7/44 | 492/26076 | 1.70857654743663e-05 | 0.00660886820236033 | 0.0056980642826857 | CDK9/HTATSF1/PRPF19/SF3B4/SNRNP70/SRRT/USP39 | 7 |
| MeSH_gene2pubmed | B_14_22 | D013698 | Templates, Genetic | 7/44 | 500/26076 | 1.89506128291825e-05 | 0.00660886820236033 | 0.0056980642826857 | BAX/CDK9/EMG1/GTF2E2/HTATSF1/SIT1/TAF10 | 7 |
| MeSH_gene2pubmed | B_14_22 | D034702 | RNA-Binding Protein FUS | 4/44 | 94/26076 | 1.9246794910405e-05 | 0.00660886820236033 | 0.0056980642826857 | CDK9/GTF2E2/HTATSF1/TAF10 | 4 |
| reactome | B_14_22 | R-HSA-162599 | Late Phase of HIV Life Cycle | 5/28 | 136/11146 | 1.9703011030176e-05 | 0.00108366560665968 | 0.00092811551957934 | CDK9/GTF2E2/GTF2H5/RAE1/TAF10 | 5 |
| GO | B_14_22 | GO:0016072 | rRNA metabolic process | 6/42 | 268/18986 | 2.56143808230111e-05 | 0.00637798082492975 | 0.00559921377288979 | EMG1/ERI3/GTF2H5/MPHOSPH6/PIN4/RBFA | 6 |
| reactome | B_14_22 | R-HSA-167172 | Transcription of the HIV genome | 4/28 | 70/11146 | 2.60659534329068e-05 | 0.00112235776933619 | 0.00096125378330707 | CDK9/GTF2E2/GTF2H5/TAF10 | 4 |
| reactome | B_14_22 | R-HSA-162587 | HIV Life Cycle | 5/28 | 149/11146 | 3.06097573455325e-05 | 0.00112235776933619 | 0.00096125378330707 | CDK9/GTF2E2/GTF2H5/RAE1/TAF10 | 5 |