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Selected Module: B_14_18


Module Info

Module_Name B_14_18
Cell_Type B
Name B_14_18: ribosome biogenesis
Meta_Module B_19
Gene_Number 34

Genes:

AATF, ABCF2, AIMP1, BRIX1, DHX33, DNAJC11, DUS3L, EXOSC2, FAM210A, GART, GEMIN4, KNOP1, MAK16, MAT2A, MAZ, MYBBP1A, NOP2, PDCD11, PHF5A, PPRC1, RABGGTB, RRP15, RRP1B, RRS1, SNHG15, TIMM8A, TIMM9, TRMT61A, TTC4, URB1, UTP14A, UTP4, WDR12, WDR3


UMAP Visualizations


UMAP for B_14_18

UMAP for B_14_18


Word Cloud

Enriched TF

Wordcloud for B_14_18
TF p.adjust Genes
E2F 0.00223030035881714 ABCF2/DNAJC11/MAT2A/MAZ/PPRC1
E2F 0.00666256884740901 ABCF2/DNAJC11/MAT2A/MAZ
RRCCGTTA 0.00666256884740901 GART/MAZ/TIMM9
E2F1 0.00666256884740901 DNAJC11/MAT2A/MAZ/PPRC1
E2F1 0.00666256884740901 DNAJC11/MAZ/PHF5A/PPRC1
E2F 0.00666256884740901 DNAJC11/MAT2A/MAZ/PPRC1
MYCMAX 0.00666256884740901 MAT2A/PPRC1/TIMM8A/TIMM9
MYBL1 0.00666256884740901 BRIX1/MAZ/NOP2/PHF5A/SNHG15


Functional Enrichment Results

enrichment_term
module ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
GO B_14_18 GO:0030686 90S preribosome 2/32 26/19960 0.00079005273074454 0.0104681986823653 0.00457398949378423 WDR12/WDR3 2
GO B_14_18 GO:0007006 mitochondrial membrane organization 3/31 120/18986 0.00097268636206688 0.0142120285124217 0.0102956860546261 DNAJC11/TIMM8A/TIMM9 3
GO B_14_18 GO:0090151 establishment of protein localization to mitochondrial membrane 2/31 34/18986 0.00140107304613799 0.0193938005860153 0.0140495413490845 TIMM8A/TIMM9 2
GO B_14_18 GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2/31 35/18986 0.00148447752701493 0.0195208794802464 0.0141416017047212 RRS1/UTP4 2
GO B_14_18 GO:0045943 positive regulation of transcription by RNA polymerase I 2/31 36/18986 0.00157020369628487 0.0196649320058534 0.0142459583472462 DHX33/MYBBP1A 2
WikiPathways B_14_18 WP1541 Energy metabolism 2/13 48/8836 0.002169641600443 0.023866057604873 0.0148449162135574 MYBBP1A/PPRC1 2
GO B_14_18 GO:0009451 RNA modification 3/31 173/18986 0.00277063568152653 0.0317585719381936 0.0230070102894258 DUS3L/NOP2/TRMT61A 3
GO B_14_18 GO:0006356 regulation of transcription by RNA polymerase I 2/31 48/18986 0.00277736560676217 0.0317585719381936 0.0230070102894258 DHX33/MYBBP1A 2
GO B_14_18 GO:0098798 mitochondrial protein-containing complex 3/32 178/19960 0.00285985585065965 0.0267027881721951 0.0116675539183375 DNAJC11/TIMM8A/TIMM9 3
GO B_14_18 GO:0098800 inner mitochondrial membrane protein complex 2/32 51/19960 0.00302295715156926 0.0267027881721951 0.0116675539183375 DNAJC11/TIMM9 2