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Selected Module: B_14_18
Module Info
| Module_Name | B_14_18 |
| Cell_Type | B |
| Name | B_14_18: ribosome biogenesis |
| Meta_Module | B_19 |
| Gene_Number | 34 |
Genes:
AATF, ABCF2, AIMP1, BRIX1, DHX33, DNAJC11, DUS3L, EXOSC2, FAM210A, GART, GEMIN4, KNOP1, MAK16, MAT2A, MAZ, MYBBP1A, NOP2, PDCD11, PHF5A, PPRC1, RABGGTB, RRP15, RRP1B, RRS1, SNHG15, TIMM8A, TIMM9, TRMT61A, TTC4, URB1, UTP14A, UTP4, WDR12, WDR3
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| E2F | 0.00223030035881714 | ABCF2/DNAJC11/MAT2A/MAZ/PPRC1 |
| E2F | 0.00666256884740901 | ABCF2/DNAJC11/MAT2A/MAZ |
| RRCCGTTA | 0.00666256884740901 | GART/MAZ/TIMM9 |
| E2F1 | 0.00666256884740901 | DNAJC11/MAT2A/MAZ/PPRC1 |
| E2F1 | 0.00666256884740901 | DNAJC11/MAZ/PHF5A/PPRC1 |
| E2F | 0.00666256884740901 | DNAJC11/MAT2A/MAZ/PPRC1 |
| MYCMAX | 0.00666256884740901 | MAT2A/PPRC1/TIMM8A/TIMM9 |
| MYBL1 | 0.00666256884740901 | BRIX1/MAZ/NOP2/PHF5A/SNHG15 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_14_18 | GO:0007007 | inner mitochondrial membrane organization | 3/31 | 45/18986 | 5.33894199542653e-05 | 0.00108010903445937 | 0.00078246842200178 | DNAJC11/TIMM8A/TIMM9 | 3 |
| GO | B_14_18 | GO:0030490 | maturation of SSU-rRNA | 3/31 | 54/18986 | 9.24005653549475e-05 | 0.00173581062059651 | 0.00125748137813876 | RRS1/UTP4/WDR3 | 3 |
| GO | B_14_18 | GO:0042255 | ribosome assembly | 3/31 | 58/18986 | 0.0001144387196562 | 0.0020064922179721 | 0.00145357250931739 | BRIX1/NOP2/RRS1 | 3 |
| hallmark | B_14_18 | HALLMARK_MYC_TARGETS_V2 | HALLMARK_MYC_TARGETS_V2 | 3/9 | 58/4384 | 0.0001745149514413 | 0.00157063456297174 | 0.00128589964219909 | MYBBP1A/NOP2/PPRC1 | 3 |
| GO | B_14_18 | GO:0045039 | protein insertion into mitochondrial inner membrane | 2/31 | 13/18986 | 0.00019900683445373 | 0.00327117484133327 | 0.00236975243658724 | TIMM8A/TIMM9 | 2 |
| GO | B_14_18 | GO:0000463 | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2/31 | 17/18986 | 0.00034557650175025 | 0.00534627176237164 | 0.00387302457069948 | URB1/WDR12 | 2 |
| WikiPathways | B_14_18 | WP4224 | Purine metabolism and related disorders | 2/13 | 23/8836 | 0.00049683281368388 | 0.0109303219010454 | 0.00679876481883209 | GART/MAT2A | 2 |
| GO | B_14_18 | GO:0140098 | catalytic activity, acting on RNA | 5/32 | 397/18737 | 0.00052325176764493 | 0.0298253507557615 | 0.0209300707057976 | DHX33/DUS3L/EXOSC2/NOP2/TRMT61A | 5 |
| KEGG | B_14_18 | hsa03008 | Ribosome biogenesis in eukaryotes | 3/9 | 168/8541 | 0.00057554667816989 | 0.00394238934989287 | 0.00301809710996583 | UTP14A/UTP4/WDR3 | 3 |
| KEGG | B_14_18 | hsa00670 | One carbon pool by folate | 2/9 | 39/8541 | 0.00071679806361688 | 0.00394238934989287 | 0.00301809710996583 | GART/MAT2A | 2 |