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Selected Module: B_14_18


Module Info

Module_Name B_14_18
Cell_Type B
Name B_14_18: ribosome biogenesis
Meta_Module B_19
Gene_Number 34

Genes:

AATF, ABCF2, AIMP1, BRIX1, DHX33, DNAJC11, DUS3L, EXOSC2, FAM210A, GART, GEMIN4, KNOP1, MAK16, MAT2A, MAZ, MYBBP1A, NOP2, PDCD11, PHF5A, PPRC1, RABGGTB, RRP15, RRP1B, RRS1, SNHG15, TIMM8A, TIMM9, TRMT61A, TTC4, URB1, UTP14A, UTP4, WDR12, WDR3


UMAP Visualizations


UMAP for B_14_18

UMAP for B_14_18


Word Cloud

Enriched TF

Wordcloud for B_14_18
TF p.adjust Genes
E2F 0.00223030035881714 ABCF2/DNAJC11/MAT2A/MAZ/PPRC1
E2F 0.00666256884740901 ABCF2/DNAJC11/MAT2A/MAZ
RRCCGTTA 0.00666256884740901 GART/MAZ/TIMM9
E2F1 0.00666256884740901 DNAJC11/MAT2A/MAZ/PPRC1
E2F1 0.00666256884740901 DNAJC11/MAZ/PHF5A/PPRC1
E2F 0.00666256884740901 DNAJC11/MAT2A/MAZ/PPRC1
MYCMAX 0.00666256884740901 MAT2A/PPRC1/TIMM8A/TIMM9
MYBL1 0.00666256884740901 BRIX1/MAZ/NOP2/PHF5A/SNHG15


Functional Enrichment Results

enrichment_term
module ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
reactome B_14_18 R-HSA-8868773 rRNA processing in the nucleus and cytosol 7/21 195/11146 4.25665836691393e-08 1.55434165608902e-06 1.16471631678392e-06 EXOSC2/NOP2/PDCD11/UTP14A/UTP4/WDR12/WDR3 7
reactome B_14_18 R-HSA-72312 rRNA processing 7/21 205/11146 6.00619532404463e-08 1.55434165608902e-06 1.16471631678392e-06 EXOSC2/NOP2/PDCD11/UTP14A/UTP4/WDR12/WDR3 7
GO B_14_18 GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 4/31 24/18986 6.03841571120899e-08 1.98512916505996e-06 1.4380963733274e-06 EXOSC2/RRS1/URB1/WDR12 4
reactome B_14_18 R-HSA-6790901 rRNA modification in the nucleus and cytosol 5/21 61/11146 7.90343214960517e-08 1.55434165608902e-06 1.16471631678392e-06 NOP2/PDCD11/UTP14A/UTP4/WDR3 5
GO B_14_18 GO:0032040 small-subunit processome 5/32 74/19960 1.13722624389588e-07 2.00909969754939e-06 8.7785885493717e-07 AATF/PDCD11/UTP14A/UTP4/WDR3 5
reactome B_14_18 R-HSA-6791226 Major pathway of rRNA processing in the nucleolus and cytosol 6/21 185/11146 8.50428669974153e-07 1.25438228821188e-05 9.39947477339853e-06 EXOSC2/PDCD11/UTP14A/UTP4/WDR12/WDR3 6
GO B_14_18 GO:0000027 ribosomal large subunit assembly 3/31 17/18986 2.63894033876933e-06 7.71157010107036e-05 5.58652867037717e-05 BRIX1/NOP2/RRS1 3
GO B_14_18 GO:0042274 ribosomal small subunit biogenesis 4/31 108/18986 2.7677040738182e-05 0.00070641690893025 0.00051175289380178 AATF/RRS1/UTP4/WDR3 4
GO B_14_18 GO:0022618 protein-RNA complex assembly 5/31 225/18986 2.95459543659042e-05 0.00070641690893025 0.00051175289380178 BRIX1/GEMIN4/NOP2/PHF5A/RRS1 5
GO B_14_18 GO:0071826 protein-RNA complex organization 5/31 234/18986 3.56403111526245e-05 0.00078111681942835 0.000565868098125 BRIX1/GEMIN4/NOP2/PHF5A/RRS1 5