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Selected Module: B_13_5
Module Info
| Module_Name | B_13_5 |
| Cell_Type | B |
| Name | B_13_5: Spliceosomes |
| Meta_Module | B_9 |
| Gene_Number | 49 |
Genes:
ACAT2, ANP32E, ARHGDIA, BCCIP, C8orf33, CBX5, CENPH, CENPM, CKAP2, CKS1B, DNMT1, DYNC2I2, EIF1AX, EIF4A1, H2AZ2, H4C3, HMGB1, HMGN1, HNRNPA2B1, HNRNPD, HNRNPR, HSPH1, KIF20B, LSM7, MCMBP, MYBL2, NCAPH2, POLR3K, PPIH, PTBP1, PTGES3, PUM3, RBM14, RBM8A, RFC2, SAE1, SMC2, SMC3, SNRPD1, SQLE, SRSF2, SSB, TACC3, TFAM, TUBB, TUBB4B, USP1, YWHAQ, ZPR1
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| E2F1DP1RB | 2.29169207565885e-09 | CBX5/DNMT1/EIF1AX/EIF4A1/HNRNPD/HNRNPR/MCMBP/SMC3/SNRPD1/SRSF2 |
| E2F4DP1 | 2.29169207565885e-09 | DNMT1/EIF1AX/EIF4A1/H2AZ2/HNRNPA2B1/HNRNPD/HNRNPR/MCMBP/SMC3/SNRPD1 |
| E2F | 1.94556737821906e-08 | DNMT1/EIF4A1/H2AZ2/HNRNPA2B1/HNRNPD/HNRNPR/MCMBP/SMC3/SNRPD1 |
| E2F1DP1 | 1.94556737821906e-08 | DNMT1/EIF4A1/H2AZ2/HNRNPA2B1/HNRNPD/HNRNPR/MCMBP/SMC3/SNRPD1 |
| E2F1DP2 | 1.94556737821906e-08 | DNMT1/EIF4A1/H2AZ2/HNRNPA2B1/HNRNPD/HNRNPR/MCMBP/SMC3/SNRPD1 |
| E2F4DP2 | 1.94556737821906e-08 | DNMT1/EIF4A1/H2AZ2/HNRNPA2B1/HNRNPD/HNRNPR/MCMBP/SMC3/SNRPD1 |
| E2F | 1.94556737821906e-08 | ANP32E/CBX5/DNMT1/EIF1AX/HNRNPD/SMC2/SMC3/SRSF2/YWHAQ |
| E2F1 | 2.39174813594465e-07 | CBX5/DNMT1/HNRNPD/SMC2/SMC3/SRSF2/USP1/YWHAQ |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_13_5 | GO:0071013 | catalytic step 2 spliceosome | 5/48 | 91/19960 | 2.58564658742352e-06 | 0.00010148662855637 | 5.64759649358295e-05 | HNRNPA2B1/HNRNPR/LSM7/RBM8A/SNRPD1 | 5 |
| MeSH_gene2pubmed | B_13_5 | D055532 | SMN Complex Proteins | 5/49 | 124/26076 | 3.61607474185573e-06 | 0.00037674978716709 | 0.00030260835997634 | HNRNPR/LSM7/SNRPD1/SRSF2/ZPR1 | 5 |
| GO | B_13_5 | GO:0000793 | condensed chromosome | 7/48 | 284/19960 | 4.90135423114356e-06 | 0.0001539025228579 | 8.56447160389296e-05 | CBX5/CENPH/CENPM/HMGB1/NCAPH2/SMC2/SMC3 | 7 |
| MeSH_gene2pubmed | B_13_5 | D004248 | DNA (Cytosine-5-)-Methyltransferases | 6/49 | 244/26076 | 6.3034417014822e-06 | 0.00058556573701459 | 0.00047033095537686 | CBX5/DNMT1/HNRNPD/PTGES3/SMC2/TFAM | 6 |
| MeSH_gene2pubmed | B_13_5 | D002842 | Chromatids | 5/49 | 139/26076 | 6.32284539067949e-06 | 0.00058556573701459 | 0.00047033095537686 | CKAP2/RFC2/SMC2/SMC3/TUBB | 5 |
| MeSH_gene2pubmed | B_13_5 | D034443 | RNA Transport | 4/49 | 70/26076 | 9.20824360995061e-06 | 0.00080790221567303 | 0.00064891334470122 | HNRNPA2B1/RBM8A/SRSF2/SSB | 4 |
| GO | B_13_5 | GO:2000573 | positive regulation of DNA biosynthetic process | 4/48 | 53/18986 | 9.61290390276558e-06 | 0.00108150062820637 | 0.00087354141413229 | HNRNPD/PTGES3/RFC2/USP1 | 4 |
| GO | B_13_5 | GO:0140694 | non-membrane-bounded organelle assembly | 8/48 | 425/18986 | 1.01631665639886e-05 | 0.00108150062820637 | 0.00087354141413229 | BCCIP/CENPH/EIF1AX/MYBL2/RBM14/SMC3/SQLE/TUBB | 8 |
| MeSH_gene2pubmed | B_13_5 | D039103 | Poly(A)-Binding Protein II | 3/49 | 23/26076 | 1.07544019886894e-05 | 0.00087958027398606 | 0.00070648571875747 | HNRNPA2B1/HSPH1/SRSF2 | 3 |
| GO | B_13_5 | GO:2001252 | positive regulation of chromosome organization | 5/48 | 116/18986 | 1.08381776559924e-05 | 0.00108150062820637 | 0.00087354141413229 | HNRNPA2B1/HNRNPD/NCAPH2/PTGES3/SMC2 | 5 |