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Selected Module: B_13_5
Module Info
| Module_Name | B_13_5 |
| Cell_Type | B |
| Name | B_13_5: Spliceosomes |
| Meta_Module | B_9 |
| Gene_Number | 49 |
Genes:
ACAT2, ANP32E, ARHGDIA, BCCIP, C8orf33, CBX5, CENPH, CENPM, CKAP2, CKS1B, DNMT1, DYNC2I2, EIF1AX, EIF4A1, H2AZ2, H4C3, HMGB1, HMGN1, HNRNPA2B1, HNRNPD, HNRNPR, HSPH1, KIF20B, LSM7, MCMBP, MYBL2, NCAPH2, POLR3K, PPIH, PTBP1, PTGES3, PUM3, RBM14, RBM8A, RFC2, SAE1, SMC2, SMC3, SNRPD1, SQLE, SRSF2, SSB, TACC3, TFAM, TUBB, TUBB4B, USP1, YWHAQ, ZPR1
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| E2F1DP1RB | 2.29169207565885e-09 | CBX5/DNMT1/EIF1AX/EIF4A1/HNRNPD/HNRNPR/MCMBP/SMC3/SNRPD1/SRSF2 |
| E2F4DP1 | 2.29169207565885e-09 | DNMT1/EIF1AX/EIF4A1/H2AZ2/HNRNPA2B1/HNRNPD/HNRNPR/MCMBP/SMC3/SNRPD1 |
| E2F | 1.94556737821906e-08 | DNMT1/EIF4A1/H2AZ2/HNRNPA2B1/HNRNPD/HNRNPR/MCMBP/SMC3/SNRPD1 |
| E2F1DP1 | 1.94556737821906e-08 | DNMT1/EIF4A1/H2AZ2/HNRNPA2B1/HNRNPD/HNRNPR/MCMBP/SMC3/SNRPD1 |
| E2F1DP2 | 1.94556737821906e-08 | DNMT1/EIF4A1/H2AZ2/HNRNPA2B1/HNRNPD/HNRNPR/MCMBP/SMC3/SNRPD1 |
| E2F4DP2 | 1.94556737821906e-08 | DNMT1/EIF4A1/H2AZ2/HNRNPA2B1/HNRNPD/HNRNPR/MCMBP/SMC3/SNRPD1 |
| E2F | 1.94556737821906e-08 | ANP32E/CBX5/DNMT1/EIF1AX/HNRNPD/SMC2/SMC3/SRSF2/YWHAQ |
| E2F1 | 2.39174813594465e-07 | CBX5/DNMT1/HNRNPD/SMC2/SMC3/SRSF2/USP1/YWHAQ |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_13_5 | GO:0098687 | chromosomal region | 9/48 | 404/19960 | 4.35188321745189e-07 | 3.13241596423853e-05 | 1.74314800557692e-05 | CBX5/CENPH/CENPM/DNMT1/H4C3/HNRNPA2B1/PTGES3/SMC3/SSB | 9 |
| GO | B_13_5 | GO:0005681 | spliceosomal complex | 7/48 | 207/19960 | 5.98550821192076e-07 | 3.13241596423853e-05 | 1.74314800557692e-05 | HNRNPA2B1/HNRNPR/LSM7/PPIH/RBM8A/SNRPD1/SRSF2 | 7 |
| reactome | B_13_5 | R-HSA-72203 | Processing of Capped Intron-Containing Pre-mRNA | 9/41 | 285/11146 | 7.0358458094448e-07 | 8.63063752625228e-05 | 6.0730458565734e-05 | HNRNPA2B1/HNRNPD/HNRNPR/LSM7/PPIH/PTBP1/RBM8A/SNRPD1/SRSF2 | 9 |
| WikiPathways | B_13_5 | WP411 | mRNA processing | 7/34 | 140/8836 | 8.11639968658536e-07 | 7.95407169285366e-05 | 6.74942710779204e-05 | HNRNPA2B1/HNRNPD/HNRNPR/LSM7/PTBP1/SNRPD1/SRSF2 | 7 |
| MeSH_gene2pubmed | B_13_5 | D012332 | RNA, Heterogeneous Nuclear | 5/49 | 92/26076 | 8.26173791377829e-07 | 0.00012398970205423 | 9.95894932674418e-05 | HNRNPA2B1/HNRNPD/HNRNPR/PTBP1/SRSF2 | 5 |
| MeSH_gene2pubmed | B_13_5 | D016914 | Ribonuclease H | 6/49 | 174/26076 | 8.92547345321412e-07 | 0.00012398970205423 | 9.95894932674418e-05 | DNMT1/HNRNPA2B1/HNRNPD/HNRNPR/RBM8A/SNRPD1 | 6 |
| GO | B_13_5 | GO:0007059 | chromosome segregation | 9/48 | 429/18986 | 1.08446683417036e-06 | 0.00017524984040192 | 0.00014155146046013 | BCCIP/CENPH/CENPM/MYBL2/NCAPH2/SMC2/SMC3/TACC3/TUBB | 9 |
| MeSH_gene2pubmed | B_13_5 | D043171 | Chromosomal Instability | 6/49 | 198/26076 | 1.89322578626622e-06 | 0.00024276979890044 | 0.00019499459110369 | BCCIP/CBX5/CENPH/DNMT1/MYBL2/SMC3 | 6 |
| MeSH_gene2pubmed | B_13_5 | D034961 | Antigens, Nuclear | 8/49 | 472/26076 | 2.55473915968745e-06 | 0.0002863205823019 | 0.00022997491913492 | CBX5/HMGB1/PTBP1/RBM8A/SAE1/SMC3/SRSF2/TUBB | 8 |
| MeSH_gene2pubmed | B_13_5 | D011072 | Poly U | 4/49 | 51/26076 | 2.57636996672379e-06 | 0.0002863205823019 | 0.00022997491913492 | HNRNPA2B1/HNRNPD/RBM8A/SSB | 4 |