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Selected Module: B_13_5
Module Info
| Module_Name | B_13_5 |
| Cell_Type | B |
| Name | B_13_5: Spliceosomes |
| Meta_Module | B_9 |
| Gene_Number | 49 |
Genes:
ACAT2, ANP32E, ARHGDIA, BCCIP, C8orf33, CBX5, CENPH, CENPM, CKAP2, CKS1B, DNMT1, DYNC2I2, EIF1AX, EIF4A1, H2AZ2, H4C3, HMGB1, HMGN1, HNRNPA2B1, HNRNPD, HNRNPR, HSPH1, KIF20B, LSM7, MCMBP, MYBL2, NCAPH2, POLR3K, PPIH, PTBP1, PTGES3, PUM3, RBM14, RBM8A, RFC2, SAE1, SMC2, SMC3, SNRPD1, SQLE, SRSF2, SSB, TACC3, TFAM, TUBB, TUBB4B, USP1, YWHAQ, ZPR1
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| E2F1DP1RB | 2.29169207565885e-09 | CBX5/DNMT1/EIF1AX/EIF4A1/HNRNPD/HNRNPR/MCMBP/SMC3/SNRPD1/SRSF2 |
| E2F4DP1 | 2.29169207565885e-09 | DNMT1/EIF1AX/EIF4A1/H2AZ2/HNRNPA2B1/HNRNPD/HNRNPR/MCMBP/SMC3/SNRPD1 |
| E2F | 1.94556737821906e-08 | DNMT1/EIF4A1/H2AZ2/HNRNPA2B1/HNRNPD/HNRNPR/MCMBP/SMC3/SNRPD1 |
| E2F1DP1 | 1.94556737821906e-08 | DNMT1/EIF4A1/H2AZ2/HNRNPA2B1/HNRNPD/HNRNPR/MCMBP/SMC3/SNRPD1 |
| E2F1DP2 | 1.94556737821906e-08 | DNMT1/EIF4A1/H2AZ2/HNRNPA2B1/HNRNPD/HNRNPR/MCMBP/SMC3/SNRPD1 |
| E2F4DP2 | 1.94556737821906e-08 | DNMT1/EIF4A1/H2AZ2/HNRNPA2B1/HNRNPD/HNRNPR/MCMBP/SMC3/SNRPD1 |
| E2F | 1.94556737821906e-08 | ANP32E/CBX5/DNMT1/EIF1AX/HNRNPD/SMC2/SMC3/SRSF2/YWHAQ |
| E2F1 | 2.39174813594465e-07 | CBX5/DNMT1/HNRNPD/SMC2/SMC3/SRSF2/USP1/YWHAQ |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| WikiPathways | B_13_5 | WP2446 | Retinoblastoma gene in cancer | 4/34 | 89/8836 | 0.00035407902585702 | 0.0115665815113294 | 0.00981482212024733 | DNMT1/HMGB1/SMC2/SMC3 | 4 |
| GO | B_13_5 | GO:0051225 | spindle assembly | 4/48 | 134/18986 | 0.00036286933068219 | 0.0116344671898949 | 0.00939730283706991 | BCCIP/MYBL2/SMC3/TUBB | 4 |
| MeSH_gene2pubmed | B_13_5 | D003716 | Dengue Virus | 3/49 | 74/26076 | 0.00036800500792627 | 0.0125196805757775 | 0.0100559048352786 | HMGB1/PTBP1/SSB | 3 |
| GO | B_13_5 | GO:0050684 | regulation of mRNA processing | 4/48 | 136/18986 | 0.00038386029710093 | 0.0116344671898949 | 0.00939730283706991 | HNRNPA2B1/PTBP1/RBM8A/SRSF2 | 4 |
| MeSH_gene2pubmed | B_13_5 | D028961 | beta Karyopherins | 4/49 | 183/26076 | 0.00038862946334696 | 0.0129569063079878 | 0.0104070879447861 | HNRNPA2B1/RBM8A/SRSF2/ZPR1 | 4 |
| GO | B_13_5 | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | 3/48 | 57/18986 | 0.00040317460559041 | 0.0116344671898949 | 0.00939730283706991 | PTBP1/RBM8A/SRSF2 | 3 |
| GO | B_13_5 | GO:1904356 | regulation of telomere maintenance via telomere lengthening | 3/48 | 57/18986 | 0.00040317460559041 | 0.0116344671898949 | 0.00939730283706991 | HNRNPA2B1/HNRNPD/PTGES3 | 3 |
| MeSH_gene2pubmed | B_13_5 | D039102 | Poly(A)-Binding Proteins | 4/49 | 190/26076 | 0.00044781413219786 | 0.0146373756543891 | 0.0117568539970214 | EIF4A1/HNRNPD/HNRNPR/PTBP1 | 4 |
| MeSH_gene2pubmed | B_13_5 | D020885 | Ribonucleoprotein, U7 Small Nuclear | 2/49 | 17/26076 | 0.00046204522773824 | 0.0148121037430703 | 0.0118971969571468 | SNRPD1/SRSF2 | 2 |
| GO | B_13_5 | GO:0060623 | regulation of chromosome condensation | 2/48 | 13/18986 | 0.00047959268700225 | 0.0133624445206146 | 0.0107930114679274 | NCAPH2/SMC2 | 2 |