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Selected Module: B_13_18
Module Info
| Module_Name | B_13_18 |
| Cell_Type | B |
| Name | B_13_18: mitochondrial translation |
| Meta_Module | B_3 |
| Gene_Number | 94 |
Genes:
ACLY, ADISSP, AGGF1, AIMP2, API5, APRT, C1D, CARD16, CCDC85B, CIAO1, COMMD8, COX14, CRIP1, CUEDC2, CYBC1, DAP3, DGUOK, DRG2, DUSP12, EIF3M, ELOF1, ENOPH1, G3BP1, GMPR2, HADHA, HAUS4, HINT1, HNRNPF, IL10RB, INTS11, LSP1, LYPLA2, M6PR, MCRS1, METAP2, MICOS13, MRPL10, MRPL50, MRPS26, MRPS27, NADK, NFYC, OXA1L, PANK2, PARVB, PDCD2, PHB2, PIH1D1, PLGRKT, PLP2, PPP2R1A, PPP4C, PPP6C, PRKAG1, PRKCD, PRPSAP2, PSMB10, PTDSS1, PYM1, QTRT1, RAB1B, RABGGTA, RAD23A, RANGRF, RNF34, RPA1, RPUSD3, RTF2, SCP2, SF3A3, SHMT2, SLC25A1, SMS, SNAPIN, SNRNP40, SNRPA, SNX5, SRI, SRP9, SUPT4H1, TBCA, THAP4, TIAL1, TMEM218, TRAPPC4, TRIM69, U2AF2, UBE2N, UBL7, UQCRC2, USP5, XRCC6, XRN2, YWHAB
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| TEL2 | 4.22477049107643e-06 | CCDC85B/GMPR2/LYPLA2/MCRS1/PIH1D1/PPP4C/PYM1/SUPT4H1/U2AF2/UBE2N |
| ACTAYRNNNCCCR | 0.00089511003692043 | CIAO1/M6PR/MICOS13/MRPL50/PPP6C/RAB1B/SHMT2/TIAL1/UBE2N/USP5 |
| GCCATNTTG | 0.00272826507798455 | DAP3/LYPLA2/NFYC/PHB2/PRPSAP2/PYM1/SNX5/TIAL1/U2AF2 |
| GGCNNMSMYNTTG | 0.0133463193412026 | CUEDC2/NFYC/PLP2/RAB1B |
| FOXR2 | 0.0133463193412026 | EIF3M/LYPLA2/M6PR/MRPS26/SUPT4H1/TRAPPC4 |
| YY1 | 0.0144355174486112 | DAP3/LYPLA2/NFYC/PYM1/SNX5/TIAL1 |
| MYBL1 | 0.0144355174486112 | AIMP2/G3BP1/HADHA/MCRS1/MICOS13/MRPL10/MRPS27/USP5 |
| GABP | 0.0144355174486112 | CCDC85B/CIAO1/PHB2/PYM1/U2AF2/UBE2N |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_13_18 | GO:0000313 | organellar ribosome | 5/94 | 88/19960 | 5.98766710044481e-05 | 0.00467038033834696 | 0.00424389036592931 | DAP3/MRPL10/MRPL50/MRPS26/MRPS27 | 5 |
| GO | B_13_18 | GO:0005761 | mitochondrial ribosome | 5/94 | 88/19960 | 5.98766710044481e-05 | 0.00467038033834696 | 0.00424389036592931 | DAP3/MRPL10/MRPL50/MRPS26/MRPS27 | 5 |
| MeSH_gene2pubmed | B_13_18 | D008930 | Mitochondria, Liver | 8/94 | 377/26076 | 6.68584789555992e-05 | 0.0371863378548234 | 0.033458830770107 | DAP3/HADHA/MRPL10/MRPL50/SCP2/SHMT2/UQCRC2/YWHAB | 8 |
| reactome | B_13_18 | R-HSA-74217 | Purine salvage | 3/73 | 13/11146 | 7.35448304088854e-05 | 0.0081487672093045 | 0.00798929105073365 | APRT/DGUOK/GMPR2 | 3 |
| MeSH_gene2pubmed | B_13_18 | D028361 | Mitochondrial Diseases | 6/94 | 197/26076 | 8.0777222576622e-05 | 0.0371863378548234 | 0.033458830770107 | C1D/DAP3/DGUOK/MRPL10/MRPS26/OXA1L | 6 |
| MeSH_gene2pubmed | B_13_18 | D005095 | Exoribonucleases | 7/94 | 287/26076 | 8.22403343637818e-05 | 0.0371863378548234 | 0.033458830770107 | C1D/EIF3M/MCRS1/PDCD2/PHB2/PIH1D1/XRN2 | 7 |
| reactome | B_13_18 | R-HSA-72766 | Translation | 9/73 | 292/11146 | 0.00011465503677784 | 0.0105864817291541 | 0.0103792980662047 | AIMP2/DAP3/EIF3M/MRPL10/MRPL50/MRPS26/MRPS27/OXA1L/SRP9 | 9 |
| reactome | B_13_18 | R-HSA-8956321 | Nucleotide salvage | 3/73 | 23/11146 | 0.0004344784624238 | 0.0343858668832556 | 0.0337129152798022 | APRT/DGUOK/GMPR2 | 3 |
| GO | B_13_18 | GO:0005681 | spliceosomal complex | 6/94 | 207/19960 | 0.00044146479824465 | 0.017721426093299 | 0.0161031402197319 | API5/HNRNPF/SF3A3/SNRNP40/SNRPA/U2AF2 | 6 |
| GO | B_13_18 | GO:0000314 | organellar small ribosomal subunit | 3/94 | 32/19960 | 0.00045439554085382 | 0.017721426093299 | 0.0161031402197319 | DAP3/MRPS26/MRPS27 | 3 |