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Selected Module: B_13_11
Module Info
| Module_Name | B_13_11 |
| Cell_Type | B |
| Name | B_13_11: Ribonucleoprotein, U1 Small Nuclear |
| Meta_Module | B_6 |
| Gene_Number | 57 |
Genes:
AFG3L2, ARPP19, BNIP2, C5orf24, CCNK, CDC5L, CHML, CHORDC1, COPA, CSGALNACT2, DDX3Y, DDX46, DDX52, DHX38, DNAJC21, DNM1L, EDRF1, FAM107B, FBXO7, FOXJ3, GABPB1, HAPSTR1, HIPK1, HNRNPC, HNRNPU, MYEF2, MYSM1, NFX1, NRAS, NUCKS1, OSBPL10, PABPN1, PANK3, PCNX1, PHF20L1, PHRF1, PTPRE, RAD21, RASSF2, RBM12, SEC22C, SMARCA5, SMARCD1, SMARCE1, SPOPL, SRSF4, TARDBP, TAX1BP1, TOB2, TRIP11, TTC7A, WDR82, XIAP, XPC, ZBTB43, ZC3H18, ZNF736
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| SRPK1 | 0.00059315333416688 | C5orf24/CDC5L/EDRF1/MYEF2/SEC22C/SMARCA5/TARDBP/XPC |
| SMTTTTGT | 0.015620829699592 | DDX3Y/HAPSTR1/HNRNPC/PANK3/RBM12/TARDBP |
| TAXCREB | 0.015620829699592 | BNIP2/PHF20L1/SMARCA5/SMARCD1 |
| MEIS1BHOXA9 | 0.015620829699592 | HIPK1/NRAS/WDR82/ZC3H18 |
| GKCGCNNNNNNNTGAYG | 0.015620829699592 | NFX1/PHF20L1/ZC3H18 |
| GCCATNTTG | 0.015620829699592 | CCNK/HAPSTR1/HNRNPC/RAD21/RBM12/TARDBP |
| ZNF223 | 0.0284387051770875 | DDX46/NUCKS1/PHRF1/SEC22C/SRSF4 |
| RRCCGTTA | 0.0347473828002813 | C5orf24/HNRNPC/SMARCA5 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| MeSH_gene2pubmed | B_13_11 | D036961 | Matrix Attachment Region Binding Proteins | 4/56 | 121/26076 | 0.00013445268865941 | 0.0377274244378306 | 0.0355804272936587 | HNRNPC/HNRNPU/SMARCA5/SRSF4 | 4 |
| GO | B_13_11 | GO:0003713 | transcription coactivator activity | 6/55 | 285/18737 | 0.00018220461331673 | 0.00728818453266937 | 0.00594562422401975 | MYSM1/NUCKS1/SMARCD1/SMARCE1/TRIP11/XPC | 6 |
| GO | B_13_11 | GO:2001251 | negative regulation of chromosome organization | 4/54 | 101/18986 | 0.00019451298645631 | 0.0465936570042127 | 0.0404125955373585 | HNRNPC/HNRNPU/RAD21/SMARCA5 | 4 |
| GO | B_13_11 | GO:1903312 | negative regulation of mRNA metabolic process | 4/54 | 103/18986 | 0.00020974945035323 | 0.0465936570042127 | 0.0404125955373585 | HNRNPC/HNRNPU/SRSF4/TARDBP | 4 |
| GO | B_13_11 | GO:0033045 | regulation of sister chromatid segregation | 4/54 | 108/18986 | 0.00025158562097307 | 0.0465936570042127 | 0.0404125955373585 | HNRNPU/RAD21/SMARCD1/SMARCE1 | 4 |
| GO | B_13_11 | GO:0005681 | spliceosomal complex | 5/55 | 207/19960 | 0.00026094121345185 | 0.00503243768800011 | 0.00364925306030417 | CDC5L/DDX46/DHX38/HNRNPC/HNRNPU | 5 |
| GO | B_13_11 | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | 6/54 | 338/18986 | 0.00038296445660671 | 0.0471844212872979 | 0.0409249897035448 | CDC5L/DDX46/DHX38/HNRNPC/HNRNPU/SRSF4 | 6 |
| GO | B_13_11 | GO:0000398 | mRNA splicing, via spliceosome | 6/54 | 338/18986 | 0.00038296445660671 | 0.0471844212872979 | 0.0409249897035448 | CDC5L/DDX46/DHX38/HNRNPC/HNRNPU/SRSF4 | 6 |
| GO | B_13_11 | GO:0000375 | RNA splicing, via transesterification reactions | 6/54 | 342/18986 | 0.00040764078865916 | 0.0471844212872979 | 0.0409249897035448 | CDC5L/DDX46/DHX38/HNRNPC/HNRNPU/SRSF4 | 6 |
| GO | B_13_11 | GO:0016363 | nuclear matrix | 4/55 | 129/19960 | 0.00044004762936914 | 0.0074258037456044 | 0.00538479335938565 | HNRNPU/RAD21/SMARCD1/SMARCE1 | 4 |