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Selected Module: B_13_11
Module Info
| Module_Name | B_13_11 |
| Cell_Type | B |
| Name | B_13_11: Ribonucleoprotein, U1 Small Nuclear |
| Meta_Module | B_6 |
| Gene_Number | 57 |
Genes:
AFG3L2, ARPP19, BNIP2, C5orf24, CCNK, CDC5L, CHML, CHORDC1, COPA, CSGALNACT2, DDX3Y, DDX46, DDX52, DHX38, DNAJC21, DNM1L, EDRF1, FAM107B, FBXO7, FOXJ3, GABPB1, HAPSTR1, HIPK1, HNRNPC, HNRNPU, MYEF2, MYSM1, NFX1, NRAS, NUCKS1, OSBPL10, PABPN1, PANK3, PCNX1, PHF20L1, PHRF1, PTPRE, RAD21, RASSF2, RBM12, SEC22C, SMARCA5, SMARCD1, SMARCE1, SPOPL, SRSF4, TARDBP, TAX1BP1, TOB2, TRIP11, TTC7A, WDR82, XIAP, XPC, ZBTB43, ZC3H18, ZNF736
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| SRPK1 | 0.00059315333416688 | C5orf24/CDC5L/EDRF1/MYEF2/SEC22C/SMARCA5/TARDBP/XPC |
| SMTTTTGT | 0.015620829699592 | DDX3Y/HAPSTR1/HNRNPC/PANK3/RBM12/TARDBP |
| TAXCREB | 0.015620829699592 | BNIP2/PHF20L1/SMARCA5/SMARCD1 |
| MEIS1BHOXA9 | 0.015620829699592 | HIPK1/NRAS/WDR82/ZC3H18 |
| GKCGCNNNNNNNTGAYG | 0.015620829699592 | NFX1/PHF20L1/ZC3H18 |
| GCCATNTTG | 0.015620829699592 | CCNK/HAPSTR1/HNRNPC/RAD21/RBM12/TARDBP |
| ZNF223 | 0.0284387051770875 | DDX46/NUCKS1/PHRF1/SEC22C/SRSF4 |
| RRCCGTTA | 0.0347473828002813 | C5orf24/HNRNPC/SMARCA5 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| MeSH_gene2pubmed | B_13_11 | D038941 | Polypyrimidine Tract-Binding Protein | 4/56 | 101/26076 | 6.67072361261558e-05 | 0.0233975630712491 | 0.0220660515290994 | HNRNPC/HNRNPU/SRSF4/XIAP | 4 |
| GO | B_13_11 | GO:0003724 | RNA helicase activity | 4/55 | 77/18737 | 7.66929044360046e-05 | 0.00468158962991067 | 0.00381919154019028 | DDX3Y/DDX46/DDX52/DHX38 | 4 |
| GO | B_13_11 | GO:0000775 | chromosome, centromeric region | 6/55 | 262/19960 | 8.16917138085622e-05 | 0.0028595766610408 | 0.00207361114601789 | HNRNPU/RAD21/RASSF2/SMARCA5/SMARCD1/SMARCE1 | 6 |
| GO | B_13_11 | GO:0008186 | ATP-dependent activity, acting on RNA | 4/55 | 79/18737 | 8.4780670911655e-05 | 0.00468158962991067 | 0.00381919154019028 | DDX3Y/DDX46/DDX52/DHX38 | 4 |
| GO | B_13_11 | GO:0004386 | helicase activity | 5/55 | 154/18737 | 8.7779805560825e-05 | 0.00468158962991067 | 0.00381919154019028 | DDX3Y/DDX46/DDX52/DHX38/SMARCA5 | 5 |
| GO | B_13_11 | GO:0033044 | regulation of chromosome organization | 6/54 | 258/18986 | 8.88488108799909e-05 | 0.0411369994374358 | 0.0356798119481227 | HNRNPC/HNRNPU/RAD21/SMARCA5/SMARCD1/SMARCE1 | 6 |
| WikiPathways | B_13_11 | WP411 | mRNA processing | 5/31 | 140/8836 | 0.0001133591706743 | 0.0114492762381047 | 0.0107392898533551 | DHX38/HNRNPC/HNRNPU/PABPN1/SRSF4 | 5 |
| GO | B_13_11 | GO:0071013 | catalytic step 2 spliceosome | 4/55 | 91/19960 | 0.00011542289947396 | 0.0028595766610408 | 0.00207361114601789 | CDC5L/DHX38/HNRNPC/HNRNPU | 4 |
| GO | B_13_11 | GO:0098687 | chromosomal region | 7/55 | 404/19960 | 0.00011606699917704 | 0.0028595766610408 | 0.00207361114601789 | HNRNPU/RAD21/RASSF2/SMARCA5/SMARCD1/SMARCE1/WDR82 | 7 |
| GO | B_13_11 | GO:0000793 | condensed chromosome | 6/55 | 284/19960 | 0.00012709229604625 | 0.0028595766610408 | 0.00207361114601789 | HNRNPU/RAD21/RASSF2/SMARCA5/SMARCD1/SMARCE1 | 6 |