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Selected Module: B_12_7
Module Info
| Module_Name | B_12_7 |
| Cell_Type | B |
| Name | B_12_7: RNA splicing |
| Meta_Module | B_6 |
| Gene_Number | 42 |
Genes:
AMD1, ATG12, ATP2B1, BAG5, BTG3, CCDC59, CCNT1, CLK1, CYLD, DNAJA1, DNTTIP2, DUSP10, DYNLL2, EIF5, FAM76B, G3BP2, GOLGA8B, HMGCS1, HNRNPH3, IDI1, ILF3, IVNS1ABP, MYLIP, NAF1, NECAP1, NFKBIZ, POLR2A, PPP1R15B, PTP4A1, RBMX, RIOK1, RSRC2, SLC25A36, SMNDC1, SRSF10, TMEM167B, TOPORS, TRA2B, TSPYL2, USP36, WDR45B, ZNF394
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| GCCATNTTG | 5.25192383417989e-06 | EIF5/HNRNPH3/ILF3/POLR2A/PPP1R15B/RBMX/RSRC2/TRA2B/TSPYL2 |
| NFMUE1 | 0.0043345724876704 | CLK1/EIF5/HNRNPH3/PPP1R15B/TRA2B |
| YY1 | 0.0043345724876704 | EIF5/HNRNPH3/POLR2A/PPP1R15B/TRA2B |
| HSF1 | 0.00510214321937256 | CYLD/DNAJA1/EIF5/NECAP1/RSRC2 |
| CREB3L2 | 0.00556491330840417 | CCDC59/HMGCS1/RIOK1/ZNF394 |
| PSMB5 | 0.00587931630723289 | DNAJA1/NFKBIZ/POLR2A/PPP1R15B/RBMX |
| SRPK1 | 0.00992879942092058 | CCNT1/DNTTIP2/EIF5/HNRNPH3/SRSF10 |
| SMTTTTGT | 0.00992879942092058 | CLK1/ILF3/PTP4A1/RBMX/TRA2B |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| MeSH_gene2pubmed | B_12_7 | D051839 | NFI Transcription Factors | 4/42 | 224/26076 | 0.00045933591179445 | 0.0269651861745088 | 0.0235656584193381 | POLR2A/RBMX/SRSF10/TRA2B | 4 |
| GO | B_12_7 | GO:0022613 | ribonucleoprotein complex biogenesis | 6/39 | 492/18986 | 0.00046348560799113 | 0.0278947858580868 | 0.0215581300264403 | DNTTIP2/EIF5/NAF1/RIOK1/SRSF10/USP36 | 6 |
| MeSH_gene2pubmed | B_12_7 | D034702 | RNA-Binding Protein FUS | 3/42 | 94/26076 | 0.00047032301467166 | 0.0269651861745088 | 0.0235656584193381 | CCNT1/POLR2A/SRSF10 | 3 |
| GO | B_12_7 | GO:0097193 | intrinsic apoptotic signaling pathway | 5/39 | 327/18986 | 0.00052333891742227 | 0.0278947858580868 | 0.0215581300264403 | BAG5/CYLD/DNAJA1/IVNS1ABP/TOPORS | 5 |
| reactome | B_12_7 | R-HSA-72203 | Processing of Capped Intron-Containing Pre-mRNA | 5/27 | 285/11146 | 0.00053665110264878 | 0.034166786868639 | 0.0291862880387933 | POLR2A/RBMX/SMNDC1/SRSF10/TRA2B | 5 |
| MeSH_gene2pubmed | B_12_7 | D017381 | Spliceosomes | 5/42 | 422/26076 | 0.00056333260927145 | 0.0302791277483405 | 0.026461808093409 | CCNT1/POLR2A/RBMX/SMNDC1/TRA2B | 5 |
| GO | B_12_7 | GO:2001242 | regulation of intrinsic apoptotic signaling pathway | 4/39 | 189/18986 | 0.00059583977365303 | 0.0278947858580868 | 0.0215581300264403 | BAG5/CYLD/DNAJA1/IVNS1ABP | 4 |
| GO | B_12_7 | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | 5/39 | 338/18986 | 0.00060803616968661 | 0.0278947858580868 | 0.0215581300264403 | HNRNPH3/ILF3/RBMX/SRSF10/TRA2B | 5 |
| GO | B_12_7 | GO:0000398 | mRNA splicing, via spliceosome | 5/39 | 338/18986 | 0.00060803616968661 | 0.0278947858580868 | 0.0215581300264403 | HNRNPH3/ILF3/RBMX/SRSF10/TRA2B | 5 |
| WikiPathways | B_12_7 | WP197 | Cholesterol biosynthesis pathway | 2/22 | 15/8836 | 0.00060932159133086 | 0.00631484564483491 | 0.00438966430127551 | HMGCS1/IDI1 | 2 |