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Selected Module: B_12_7
Module Info
| Module_Name | B_12_7 |
| Cell_Type | B |
| Name | B_12_7: RNA splicing |
| Meta_Module | B_6 |
| Gene_Number | 42 |
Genes:
AMD1, ATG12, ATP2B1, BAG5, BTG3, CCDC59, CCNT1, CLK1, CYLD, DNAJA1, DNTTIP2, DUSP10, DYNLL2, EIF5, FAM76B, G3BP2, GOLGA8B, HMGCS1, HNRNPH3, IDI1, ILF3, IVNS1ABP, MYLIP, NAF1, NECAP1, NFKBIZ, POLR2A, PPP1R15B, PTP4A1, RBMX, RIOK1, RSRC2, SLC25A36, SMNDC1, SRSF10, TMEM167B, TOPORS, TRA2B, TSPYL2, USP36, WDR45B, ZNF394
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| GCCATNTTG | 5.25192383417989e-06 | EIF5/HNRNPH3/ILF3/POLR2A/PPP1R15B/RBMX/RSRC2/TRA2B/TSPYL2 |
| NFMUE1 | 0.0043345724876704 | CLK1/EIF5/HNRNPH3/PPP1R15B/TRA2B |
| YY1 | 0.0043345724876704 | EIF5/HNRNPH3/POLR2A/PPP1R15B/TRA2B |
| HSF1 | 0.00510214321937256 | CYLD/DNAJA1/EIF5/NECAP1/RSRC2 |
| CREB3L2 | 0.00556491330840417 | CCDC59/HMGCS1/RIOK1/ZNF394 |
| PSMB5 | 0.00587931630723289 | DNAJA1/NFKBIZ/POLR2A/PPP1R15B/RBMX |
| SRPK1 | 0.00992879942092058 | CCNT1/DNTTIP2/EIF5/HNRNPH3/SRSF10 |
| SMTTTTGT | 0.00992879942092058 | CLK1/ILF3/PTP4A1/RBMX/TRA2B |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| MeSH_gene2pubmed | B_12_7 | D051840 | Y-Box-Binding Protein 1 | 4/42 | 171/26076 | 0.00016452493843143 | 0.0128628588228214 | 0.0112412254583775 | POLR2A/RBMX/SRSF10/TRA2B | 4 |
| GO | B_12_7 | GO:0016607 | nuclear speck | 6/41 | 416/19960 | 0.00019167355165125 | 0.00987118791003968 | 0.00837310778266013 | FAM76B/NFKBIZ/SMNDC1/SRSF10/TOPORS/USP36 | 6 |
| MeSH_gene2pubmed | B_12_7 | D034761 | Heterogeneous-Nuclear Ribonucleoprotein Group M | 2/42 | 13/26076 | 0.00019533342398835 | 0.0139988953858319 | 0.0122340407655863 | HNRNPH3/ILF3 | 2 |
| WikiPathways | B_12_7 | WP4718 | Cholesterol metabolism with Bloch and Kandutsch Russell pathways | 3/22 | 47/8836 | 0.00020236181727177 | 0.0035750587718014 | 0.00248514512439025 | HMGCS1/IDI1/MYLIP | 3 |
| GO | B_12_7 | GO:0043508 | negative regulation of JUN kinase activity | 2/39 | 12/18986 | 0.00026785796606627 | 0.0266327349117321 | 0.0205827700240398 | DNAJA1/DUSP10 | 2 |
| GO | B_12_7 | GO:0061723 | glycophagy | 2/39 | 12/18986 | 0.00026785796606627 | 0.0266327349117321 | 0.0205827700240398 | ATG12/WDR45B | 2 |
| MeSH_gene2pubmed | B_12_7 | D015757 | Genes, rev | 2/42 | 16/26076 | 0.00029959296977853 | 0.0198192272315034 | 0.0173205976050103 | AMD1/CCNT1 | 2 |
| GO | B_12_7 | GO:2000232 | regulation of rRNA processing | 2/39 | 15/18986 | 0.00042448098843803 | 0.0278947858580868 | 0.0215581300264403 | RIOK1/USP36 | 2 |
| WikiPathways | B_12_7 | WP4190 | Mevalonate arm of cholesterol biosynthesis pathway | 2/22 | 13/8836 | 0.00045400669686997 | 0.00601558873352722 | 0.00418164062906559 | HMGCS1/IDI1 | 2 |
| GO | B_12_7 | GO:0042254 | ribosome biogenesis | 5/39 | 317/18986 | 0.00045436396646896 | 0.0278947858580868 | 0.0215581300264403 | DNTTIP2/EIF5/NAF1/RIOK1/USP36 | 5 |