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Selected Module: B_12_7
Module Info
| Module_Name | B_12_7 |
| Cell_Type | B |
| Name | B_12_7: RNA splicing |
| Meta_Module | B_6 |
| Gene_Number | 42 |
Genes:
AMD1, ATG12, ATP2B1, BAG5, BTG3, CCDC59, CCNT1, CLK1, CYLD, DNAJA1, DNTTIP2, DUSP10, DYNLL2, EIF5, FAM76B, G3BP2, GOLGA8B, HMGCS1, HNRNPH3, IDI1, ILF3, IVNS1ABP, MYLIP, NAF1, NECAP1, NFKBIZ, POLR2A, PPP1R15B, PTP4A1, RBMX, RIOK1, RSRC2, SLC25A36, SMNDC1, SRSF10, TMEM167B, TOPORS, TRA2B, TSPYL2, USP36, WDR45B, ZNF394
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| GCCATNTTG | 5.25192383417989e-06 | EIF5/HNRNPH3/ILF3/POLR2A/PPP1R15B/RBMX/RSRC2/TRA2B/TSPYL2 |
| NFMUE1 | 0.0043345724876704 | CLK1/EIF5/HNRNPH3/PPP1R15B/TRA2B |
| YY1 | 0.0043345724876704 | EIF5/HNRNPH3/POLR2A/PPP1R15B/TRA2B |
| HSF1 | 0.00510214321937256 | CYLD/DNAJA1/EIF5/NECAP1/RSRC2 |
| CREB3L2 | 0.00556491330840417 | CCDC59/HMGCS1/RIOK1/ZNF394 |
| PSMB5 | 0.00587931630723289 | DNAJA1/NFKBIZ/POLR2A/PPP1R15B/RBMX |
| SRPK1 | 0.00992879942092058 | CCNT1/DNTTIP2/EIF5/HNRNPH3/SRSF10 |
| SMTTTTGT | 0.00992879942092058 | CLK1/ILF3/PTP4A1/RBMX/TRA2B |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| MeSH_gene2pubmed | B_12_7 | D004004 | Dichlororibofuranosylbenzimidazole | 4/42 | 126/26076 | 5.04591198315496e-05 | 0.00619926329359038 | 0.00541771602401901 | CCNT1/CLK1/POLR2A/TOPORS | 4 |
| GO | B_12_7 | GO:0005681 | spliceosomal complex | 5/41 | 207/19960 | 6.32231360555317e-05 | 0.00651198301371976 | 0.0055237055711675 | HNRNPH3/IVNS1ABP/RBMX/SMNDC1/TRA2B | 5 |
| GO | B_12_7 | GO:0000375 | RNA splicing, via transesterification reactions | 6/39 | 342/18986 | 6.45935227765589e-05 | 0.0112392729631213 | 0.00868612898390043 | HNRNPH3/ILF3/RBMX/SMNDC1/SRSF10/TRA2B | 6 |
| MeSH_gene2pubmed | B_12_7 | D017415 | Ribonucleoprotein, U5 Small Nuclear | 3/42 | 49/26076 | 6.79832999393519e-05 | 0.00681500428515182 | 0.00595582993830894 | CCNT1/ILF3/SMNDC1 | 3 |
| MeSH_gene2pubmed | B_12_7 | D034521 | Nuclear Matrix-Associated Proteins | 5/42 | 270/26076 | 7.13198122864726e-05 | 0.00681500428515182 | 0.00595582993830894 | ILF3/POLR2A/RBMX/SRSF10/TRA2B | 5 |
| MeSH_gene2pubmed | B_12_7 | D053487 | DEAD-box RNA Helicases | 6/42 | 465/26076 | 9.47911371719824e-05 | 0.00815203779679048 | 0.00712430230955741 | ATG12/ILF3/RBMX/SMNDC1/SRSF10/TRA2B | 6 |
| reactome | B_12_7 | R-HSA-72163 | mRNA Splicing - Major Pathway | 5/27 | 207/11146 | 0.000121802311349 | 0.01390071639032 | 0.0118744063956991 | POLR2A/RBMX/SMNDC1/SRSF10/TRA2B | 5 |
| reactome | B_12_7 | R-HSA-72172 | mRNA Splicing | 5/27 | 215/11146 | 0.00014555723968921 | 0.01390071639032 | 0.0118744063956991 | POLR2A/RBMX/SMNDC1/SRSF10/TRA2B | 5 |
| GO | B_12_7 | GO:0033120 | positive regulation of RNA splicing | 3/39 | 50/18986 | 0.00014691192458998 | 0.0204501399029252 | 0.0158046302032589 | POLR2A/RBMX/TRA2B | 3 |
| WikiPathways | B_12_7 | WP5329 | Cholesterol biosynthesis pathway in hepatocytes | 3/22 | 43/8836 | 0.00015501174200506 | 0.0035750587718014 | 0.00248514512439025 | HMGCS1/IDI1/MYLIP | 3 |