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Selected Module: B_12_6


Module Info

Module_Name B_12_6
Cell_Type B
Name B_12_6: RNA polymerase II-specific DNA-binding transcription factor binding
Meta_Module B_6
Gene_Number 31

Genes:

AKAP8, ARL6IP1, BIRC2, C11orf58, CHD4, CSDE1, CTNNB1, DBF4, DDX24, DHX9, EZR, FUBP1, GTPBP4, MALAT1, MED13, MEF2D, NUP54, OTUD4, PPP2R3C, PRPF40A, RAB22A, SLC25A33, SPPL2A, TAB2, TAMALIN, TCERG1, TP53BP2, UBQLN1, USP16, ZBTB21, ZNF326


UMAP Visualizations


UMAP for B_12_6

UMAP for B_12_6


Word Cloud

Enriched TF

Wordcloud for B_12_6
TF p.adjust Genes
CCAWNWWNNNGGC 0.00075078075391258 CSDE1/MED13/RAB22A/ZNF326
AAGWWRNYGGC 0.0494759839291753 CHD4/RAB22A/ZNF326


Functional Enrichment Results

enrichment_term
module ID Description GeneRatio BgRatio pvalue p.adjust qvalue geneID Count
GO B_12_6 GO:2000767 positive regulation of cytoplasmic translation 2/31 16/18986 0.00030523090629008 0.0491443848493514 0.0365247210316733 CSDE1/DHX9 2
GO B_12_6 GO:0031396 regulation of protein ubiquitination 4/31 205/18986 0.00033046176171513 0.0491443848493514 0.0365247210316733 BIRC2/CTNNB1/GTPBP4/UBQLN1 4
GO B_12_6 GO:0035613 RNA stem-loop binding 2/31 21/18737 0.00054552247246436 0.00994202270383551 0.00563515456897559 CSDE1/DHX9 2
GO B_12_6 GO:0043130 ubiquitin binding 3/31 100/18737 0.00059482187116964 0.00994202270383551 0.00563515456897559 BIRC2/TAB2/USP16 3
reactome B_12_6 R-HSA-72203 Processing of Capped Intron-Containing Pre-mRNA 4/17 285/11146 0.00076562453745859 0.0474787647197263 0.0315974380257421 DHX9/NUP54/PRPF40A/TCERG1 4
GO B_12_6 GO:0034237 protein kinase A regulatory subunit binding 2/31 25/18737 0.00077611185643509 0.0113506359003633 0.0064335588099225 AKAP8/EZR 2
reactome B_12_6 R-HSA-525793 Myogenesis 2/17 30/11146 0.00092885713749704 0.0474787647197263 0.0315974380257421 CTNNB1/MEF2D 2
GO B_12_6 GO:0097718 disordered domain specific binding 2/31 28/18737 0.00097488316804663 0.0118199279678703 0.00669955431377264 CTNNB1/EZR 2
GO B_12_6 GO:0032182 ubiquitin-like protein binding 3/31 120/18737 0.00101025025366413 0.0118199279678703 0.00669955431377264 BIRC2/TAB2/USP16 3
reactome B_12_6 R-HSA-5357956 TNFR1-induced NF-kappa-B signaling pathway 2/17 33/11146 0.00112441201589804 0.0474787647197263 0.0315974380257421 BIRC2/TAB2 2