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Selected Module: B_12_13
Module Info
| Module_Name | B_12_13 |
| Cell_Type | B |
| Name | B_12_13: ribonucleoprotein complex biogenesis |
| Meta_Module | B_19 |
| Gene_Number | 60 |
Genes:
ANP32B, ATIC, AUP1, BANF1, CBX3, CDC123, CMSS1, COA4, COX20, DCTPP1, DDX56, DKC1, DPH2, EFTUD2, EIF3B, EXOSC7, FAM162A, FKBP4, GFM1, GPATCH4, HAT1, HDAC2, HDHD5, IFRD2, LAS1L, LTV1, LYAR, MFNG, MPHOSPH10, NCL, NDUFAF4, NIFK, NOC2L, NOLC1, NOP14, NOP16, NOP56, NPM1, NUDCD1, NUP62, ODC1, PAK1IP1, PES1, PNO1, PNPT1, POLD2, POLE3, PPP1R14B, RPF2, RPP30, RRP7A, RRP9, RUVBL1, SET, SNRPD3, SYNCRIP, TBRG4, TRIAP1, TRMT6, UMPS
UMAP Visualizations
Word Cloud
Enriched TF
Functional Enrichment Results
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enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| GO | B_12_13 | GO:0022613 | ribonucleoprotein complex biogenesis | 23/58 | 492/18986 | 7.41293991627811e-22 | 6.47890948682707e-19 | 5.2592857932331e-19 | DDX56/DKC1/EIF3B/EXOSC7/LAS1L/LTV1/LYAR/MPHOSPH10/NOC2L/NOLC1/NOP14/NOP16/NOP56/NPM1/PAK1IP1/PES1/PNO1/RPF2/RPP30/RRP7A/RRP9/RUVBL1/SNRPD3 | 23 |
| GO | B_12_13 | GO:0042254 | ribosome biogenesis | 20/58 | 317/18986 | 1.62004769721089e-21 | 7.07960843681158e-19 | 5.74690604168494e-19 | DDX56/DKC1/EXOSC7/LAS1L/LTV1/LYAR/MPHOSPH10/NOC2L/NOLC1/NOP14/NOP16/NOP56/NPM1/PAK1IP1/PES1/PNO1/RPF2/RPP30/RRP7A/RRP9 | 20 |
| GO | B_12_13 | GO:0016072 | rRNA metabolic process | 17/58 | 268/18986 | 2.48132122827739e-18 | 7.22891584504812e-16 | 5.86810704511915e-16 | DDX56/DKC1/EXOSC7/LAS1L/LYAR/MPHOSPH10/NCL/NIFK/NOLC1/NOP14/NOP56/PAK1IP1/PES1/RPF2/RPP30/RRP7A/RRP9 | 17 |
| GO | B_12_13 | GO:0006364 | rRNA processing | 15/58 | 225/18986 | 1.51408066793131e-16 | 3.30826625942992e-14 | 2.68550097417291e-14 | DDX56/DKC1/EXOSC7/LAS1L/LYAR/MPHOSPH10/NOLC1/NOP14/NOP56/PAK1IP1/PES1/RPF2/RPP30/RRP7A/RRP9 | 15 |
| hallmark | B_12_13 | HALLMARK_MYC_TARGETS_V2 | HALLMARK_MYC_TARGETS_V2 | 12/32 | 58/4384 | 1.59776945702735e-15 | 3.03576196835197e-14 | 2.35460762088242e-14 | CBX3/DCTPP1/LAS1L/MPHOSPH10/NDUFAF4/NOLC1/NOP16/NOP56/NPM1/PES1/RRP9/TBRG4 | 12 |
| reactome | B_12_13 | R-HSA-8868773 | rRNA processing in the nucleus and cytosol | 13/42 | 195/11146 | 1.57611406745428e-13 | 3.69853101679962e-11 | 2.99110980819482e-11 | DKC1/EXOSC7/LAS1L/LTV1/MPHOSPH10/NCL/NOP14/NOP56/PES1/PNO1/RPP30/RRP7A/RRP9 | 13 |
| reactome | B_12_13 | R-HSA-72312 | rRNA processing | 13/42 | 205/11146 | 3.00693578601595e-13 | 3.69853101679962e-11 | 2.99110980819482e-11 | DKC1/EXOSC7/LAS1L/LTV1/MPHOSPH10/NCL/NOP14/NOP56/PES1/PNO1/RPP30/RRP7A/RRP9 | 13 |
| hallmark | B_12_13 | HALLMARK_MYC_TARGETS_V1 | HALLMARK_MYC_TARGETS_V1 | 15/32 | 200/4384 | 1.31070508417545e-12 | 1.24516982996668e-11 | 9.65782693602961e-12 | CBX3/EIF3B/EXOSC7/HDAC2/NOLC1/NOP16/NOP56/NPM1/ODC1/POLD2/POLE3/RRP9/SET/SNRPD3/SYNCRIP | 15 |
| reactome | B_12_13 | R-HSA-6791226 | Major pathway of rRNA processing in the nucleolus and cytosol | 12/42 | 185/11146 | 2.18990812535163e-12 | 1.79572466278834e-10 | 1.45225486207529e-10 | EXOSC7/LAS1L/LTV1/MPHOSPH10/NCL/NOP14/NOP56/PES1/PNO1/RPP30/RRP7A/RRP9 | 12 |
| GO | B_12_13 | GO:0030684 | preribosome | 9/59 | 106/19960 | 2.39577163521865e-11 | 2.97075682767112e-09 | 1.51311892750652e-09 | LTV1/MPHOSPH10/NOC2L/NOP14/NOP56/PES1/PNO1/RRP7A/RRP9 | 9 |