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Selected Module: B_12_13
Module Info
| Module_Name | B_12_13 |
| Cell_Type | B |
| Name | B_12_13: ribonucleoprotein complex biogenesis |
| Meta_Module | B_19 |
| Gene_Number | 60 |
Genes:
ANP32B, ATIC, AUP1, BANF1, CBX3, CDC123, CMSS1, COA4, COX20, DCTPP1, DDX56, DKC1, DPH2, EFTUD2, EIF3B, EXOSC7, FAM162A, FKBP4, GFM1, GPATCH4, HAT1, HDAC2, HDHD5, IFRD2, LAS1L, LTV1, LYAR, MFNG, MPHOSPH10, NCL, NDUFAF4, NIFK, NOC2L, NOLC1, NOP14, NOP16, NOP56, NPM1, NUDCD1, NUP62, ODC1, PAK1IP1, PES1, PNO1, PNPT1, POLD2, POLE3, PPP1R14B, RPF2, RPP30, RRP7A, RRP9, RUVBL1, SET, SNRPD3, SYNCRIP, TBRG4, TRIAP1, TRMT6, UMPS
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| MYCMAX | 2.5905944969521e-05 | DCTPP1/IFRD2/LYAR/NCL/NOP56/NPM1/ODC1/SYNCRIP |
| E2F1 | 4.15633532006135e-05 | CBX3/DCTPP1/NCL/NOLC1/NUP62/SYNCRIP/TRMT6 |
| E2F | 4.15633532006135e-05 | CBX3/DCTPP1/NCL/NOLC1/NUP62/SYNCRIP/TRMT6 |
| E2F1DP1 | 4.15633532006135e-05 | CBX3/DCTPP1/NCL/NOLC1/NUP62/SYNCRIP/TRMT6 |
| E2F1DP2 | 4.15633532006135e-05 | CBX3/DCTPP1/NCL/NOLC1/NUP62/SYNCRIP/TRMT6 |
| E2F4DP2 | 4.15633532006135e-05 | CBX3/DCTPP1/NCL/NOLC1/NUP62/SYNCRIP/TRMT6 |
| E2F4DP1 | 4.15633532006135e-05 | CBX3/DCTPP1/NCL/NOLC1/NUP62/SYNCRIP/TRMT6 |
| EPC1 | 0.00084259806510092 | ANP32B/BANF1/CMSS1/HDAC2/NCL/NOP56/TRIAP1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| MeSH_gene2pubmed | B_12_13 | D006378 | Helper Viruses | 2/60 | 25/26076 | 0.00150959687523888 | 0.0485926994164732 | 0.0425607540074461 | FKBP4/IFRD2 | 2 |
| MeSH_gene2pubmed | B_12_13 | D016679 | Genome, Viral | 5/60 | 368/26076 | 0.00157507010977193 | 0.0488038941318972 | 0.0427457325420567 | BANF1/CBX3/HDAC2/IFRD2/SET | 5 |
| GO | B_12_13 | GO:0042575 | DNA polymerase complex | 2/59 | 20/19960 | 0.00157710834653492 | 0.0162967862475275 | 0.00830057024492061 | POLD2/POLE3 | 2 |
| MeSH_gene2pubmed | B_12_13 | D014346 | Trypanosoma brucei brucei | 3/60 | 100/26076 | 0.00159811240230394 | 0.0488038941318972 | 0.0427457325420567 | NOLC1/ODC1/RRP9 | 3 |
| GO | B_12_13 | GO:0015030 | Cajal body | 3/59 | 83/19960 | 0.00190575190094826 | 0.0168965898373026 | 0.00860607292222541 | DKC1/EFTUD2/NOLC1 | 3 |
| GO | B_12_13 | GO:0005697 | telomerase holoenzyme complex | 2/59 | 22/19960 | 0.00191016434499229 | 0.0168965898373026 | 0.00860607292222541 | DKC1/SNRPD3 | 2 |
| GO | B_12_13 | GO:0000178 | exosome (RNase complex) | 2/59 | 23/19960 | 0.00208811753730334 | 0.0168965898373026 | 0.00860607292222541 | EXOSC7/PNPT1 | 2 |
| GO | B_12_13 | GO:0005758 | mitochondrial intermembrane space | 3/59 | 87/19960 | 0.0021802051402971 | 0.0168965898373026 | 0.00860607292222541 | COA4/PNPT1/TRIAP1 | 3 |
| GO | B_12_13 | GO:0071013 | catalytic step 2 spliceosome | 3/59 | 91/19960 | 0.00247803567699496 | 0.0180750837616103 | 0.00920632449657572 | EFTUD2/SNRPD3/SYNCRIP | 3 |
| GO | B_12_13 | GO:0070603 | SWI/SNF superfamily-type complex | 3/59 | 94/19960 | 0.00271714619927426 | 0.0187181182616671 | 0.00953384631324303 | HDAC2/POLE3/RUVBL1 | 3 |