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Selected Module: B_12_13
Module Info
| Module_Name | B_12_13 |
| Cell_Type | B |
| Name | B_12_13: ribonucleoprotein complex biogenesis |
| Meta_Module | B_19 |
| Gene_Number | 60 |
Genes:
ANP32B, ATIC, AUP1, BANF1, CBX3, CDC123, CMSS1, COA4, COX20, DCTPP1, DDX56, DKC1, DPH2, EFTUD2, EIF3B, EXOSC7, FAM162A, FKBP4, GFM1, GPATCH4, HAT1, HDAC2, HDHD5, IFRD2, LAS1L, LTV1, LYAR, MFNG, MPHOSPH10, NCL, NDUFAF4, NIFK, NOC2L, NOLC1, NOP14, NOP16, NOP56, NPM1, NUDCD1, NUP62, ODC1, PAK1IP1, PES1, PNO1, PNPT1, POLD2, POLE3, PPP1R14B, RPF2, RPP30, RRP7A, RRP9, RUVBL1, SET, SNRPD3, SYNCRIP, TBRG4, TRIAP1, TRMT6, UMPS
UMAP Visualizations
Word Cloud
Enriched TF
| TF | p.adjust | Genes |
|---|---|---|
| MYCMAX | 2.5905944969521e-05 | DCTPP1/IFRD2/LYAR/NCL/NOP56/NPM1/ODC1/SYNCRIP |
| E2F1 | 4.15633532006135e-05 | CBX3/DCTPP1/NCL/NOLC1/NUP62/SYNCRIP/TRMT6 |
| E2F | 4.15633532006135e-05 | CBX3/DCTPP1/NCL/NOLC1/NUP62/SYNCRIP/TRMT6 |
| E2F1DP1 | 4.15633532006135e-05 | CBX3/DCTPP1/NCL/NOLC1/NUP62/SYNCRIP/TRMT6 |
| E2F1DP2 | 4.15633532006135e-05 | CBX3/DCTPP1/NCL/NOLC1/NUP62/SYNCRIP/TRMT6 |
| E2F4DP2 | 4.15633532006135e-05 | CBX3/DCTPP1/NCL/NOLC1/NUP62/SYNCRIP/TRMT6 |
| E2F4DP1 | 4.15633532006135e-05 | CBX3/DCTPP1/NCL/NOLC1/NUP62/SYNCRIP/TRMT6 |
| EPC1 | 0.00084259806510092 | ANP32B/BANF1/CMSS1/HDAC2/NCL/NOP56/TRIAP1 |
Functional Enrichment Results
|
enrichment_term
|
module | ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | geneID | Count |
|---|---|---|---|---|---|---|---|---|---|---|
| MeSH_gene2pubmed | B_12_13 | D015694 | Gene Products, rev | 4/60 | 136/26076 | 0.00027525598686412 | 0.0163914940177585 | 0.0143567727885445 | ANP32B/NOLC1/NPM1/NUP62 | 4 |
| MeSH_gene2pubmed | B_12_13 | D009685 | Nuclear Envelope | 6/60 | 409/26076 | 0.00035157560661926 | 0.0199393594039783 | 0.0174642318877038 | BANF1/CBX3/NCL/NOLC1/NUP62/SET | 6 |
| MeSH_gene2pubmed | B_12_13 | D012595 | Scleroderma, Systemic | 5/60 | 279/26076 | 0.00045690570343841 | 0.0247352133088707 | 0.0216647632587307 | EXOSC7/MPHOSPH10/RPP30/RRP9/SNRPD3 | 5 |
| hallmark | B_12_13 | HALLMARK_E2F_TARGETS | HALLMARK_E2F_TARGETS | 7/32 | 200/4384 | 0.00047040855207785 | 0.0022344406223698 | 0.0017330841392342 | DCTPP1/LYAR/NOLC1/NOP56/POLD2/SYNCRIP/TBRG4 | 7 |
| MeSH_gene2pubmed | B_12_13 | D013947 | Thymosin | 4/60 | 164/26076 | 0.0005591085140439 | 0.0272511062099878 | 0.0238683514552989 | ANP32B/HDAC2/NUP62/SET | 4 |
| MeSH_gene2pubmed | B_12_13 | D013692 | Telophase | 3/60 | 70/26076 | 0.00056812080078395 | 0.0272511062099878 | 0.0238683514552989 | BANF1/CBX3/NOLC1 | 3 |
| MeSH_gene2pubmed | B_12_13 | D009698 | Nucleoproteins | 4/60 | 165/26076 | 0.00057202154093173 | 0.0272511062099878 | 0.0238683514552989 | BANF1/CBX3/HDAC2/POLE3 | 4 |
| reactome | B_12_13 | R-HSA-9836573 | Mitochondrial RNA degradation | 2/42 | 10/11146 | 0.00061196916396984 | 0.0301088828673161 | 0.0243499309453263 | PNPT1/TBRG4 | 2 |
| MeSH_gene2pubmed | B_12_13 | D051840 | Y-Box-Binding Protein 1 | 4/60 | 171/26076 | 0.00065399280090848 | 0.0299579009954619 | 0.0262391443603365 | EFTUD2/NCL/NPM1/SNRPD3 | 4 |
| GO | B_12_13 | GO:0000228 | nuclear chromosome | 5/59 | 236/19960 | 0.00065938127832899 | 0.0116804683589708 | 0.00594930476687817 | HDAC2/NIFK/POLD2/POLE3/RUVBL1 | 5 |